SIAM Journal on Scientific Computing, Volume 36

Volume 36, Number 1, 2014

Methods and Algorithms for Scientific Computing

• 
  Ronald M. Caplan, Ricardo Carretero-González:
  A Modulus-Squared Dirichlet Boundary Condition for Time-Dependent Complex Partial Differential Equations and Its Application to the Nonlinear Schrödinger Equation.
• 
  Jayadeep Gopalakrishnan, Ignacio Muga, Nicole Olivares:
  Dispersive and Dissipative Errors in the DPG Method with Scaled Norms for Helmholtz Equation.
• 
  Mohsen Zayernouri, George E. Karniadakis:
  Fractional Spectral Collocation Method.
• 
  Eugene Vecharynski, Yousef Saad, Masha Sosonkina:
  Graph Partitioning Using Matrix Values for Preconditioning Symmetric Positive Definite Systems.
• 
  Mikko Byckling, Marko Huhtanen:
  Preconditioning with Direct Approximate Factoring of the Inverse.
• 
  Jean-Paul Berrut, Seyyed Ahmad Hosseini, Georges Klein:
  The Linear Barycentric Rational Quadrature Method for Volterra Integral Equations.
• 
  Colin Fox, Albert Parker:
  Convergence in Variance of Chebyshev Accelerated Gibbs Samplers.
• 
  Nicholas Hale, Alex Townsend:
  A Fast, Simple, and Stable Chebyshev-Legendre Transform Using an Asymptotic Formula.
• 
  Benjamin Peherstorfer, Daniel Butnaru, Karen Willcox, Hans-Joachim Bungartz:
  Localized Discrete Empirical Interpolation Method.
• 
  Hsueh-Chen Lee:
  An Adaptively Refined Least-Squares Finite Element Method for Generalized Newtonian Fluid Flows Using the Carreau Model.
• 
  Matthew Elsey, Selim Esedoglu:
  Fast and Accurate Redistancing by Directional Optimization.
• 
  Masayuki Yano:
  A Space-Time Petrov-Galerkin Certified Reduced Basis Method: Application to the Boussinesq Equations.
• 
  Bogdan Vioreanu, Vladimir Rokhlin:
  Spectra of Multiplication Operators as a Numerical Tool.
• 
  Jie Chen, Lei Wang, Mihai Anitescu:
  A Fast Summation Tree Code for Matérn Kernel.

Computational Methods in Science and Engineering

• 
  Carola Kruse, Simon Shaw:
  Time-Decoupled High Order Continuous Space-Time Finite Element Schemes for the Heat Equation.
• 
  Yasunori Aoki, Ken Hayami, Hans De Sterck, Akihiko Konagaya:
  Cluster Newton Method for Sampling Multiple Solutions of Underdetermined Inverse Problems: Application to a Parameter Identification Problem in Pharmacokinetics.
• 
  Ming Li, Zhitao Fan, Hui Ji, Zuowei Shen:
  Wavelet Frame Based Algorithm for 3D Reconstruction in Electron Microscopy.
• 
  James Rankin, Daniele Avitabile, Javier Baladron, Grégory Faye, David J. B. Lloyd:
  Continuation of Localized Coherent Structures in Nonlocal Neural Field Equations.
• 
  Michael K. Ng, Jianyu Pan:
  Weighted Toeplitz Regularized Least Squares Computation for Image Restoration.
• 
  Jie Shen, Xiaofeng Yang:
  Decoupled Energy Stable Schemes for Phase-Field Models of Two-Phase Complex Fluids.

Software and High-Performance Computing

• 
  Cui Cong, Xiao-Chuan Cai, Karl Gustafson:
  Implicit Space-Time Domain Decomposition Methods for Stochastic Parabolic Partial Differential Equations.
• 
  Patrick E. Farrell, Colin J. Cotter, Simon W. Funke:
  A Framework for the Automation of Generalized Stability Theory.
• 
  Jack Poulson, Laurent Demanet, Nicholas Maxwell, Lexing Ying:
  A Parallel Butterfly Algorithm.
• 
  Emmanuel Agullo, Bérenger Bramas, Olivier Coulaud, Eric Darve, Matthias Messner, Toru Takahashi:
  Task-Based FMM for Multicore Architectures.

Volume 36, Number 2, 2014

Methods and Algorithms for Scientific Computing

• 
  Daniel Wirtz, Danny C. Sorensen, Bernard Haasdonk:
  A Posteriori Error Estimation for DEIM Reduced Nonlinear Dynamical Systems.
• 
  Alexei Bespalov, Catherine Elizabeth Powell, David J. Silvester:
  Energy Norm A Posteriori Error Estimation for Parametric Operator Equations.
• 
  Jing Li, Xin Qi, Dongbin Xiu:
  On Upper and Lower Bounds for Quantity of Interest in Problems Subject to Epistemic Uncertainty.
• 
  Sebastiano Boscarino, Philippe G. LeFloch, Giovanni Russo:
  High-Order Asymptotic-Preserving Methods for Fully Nonlinear Relaxation Problems.
• 
  Pierre-David Létourneau, Cris Cecka, Eric Darve:
  Cauchy Fast Multipole Method for General Analytic Kernels.
• 
  Alex H. Barnett:
  Evaluation of Layer Potentials Close to the Boundary for Laplace and Helmholtz Problems on Analytic Planar Domains.
• 
  Thomas Carraro, Michael Geiger, Rolf Rannacher:
  Indirect Multiple Shooting for Nonlinear Parabolic Optimal Control Problems with Control Constraints.
• 
  Stephen G. Walker:
  Sampling Unnormalized Probabilities: An Alternative to the Metropolis-Hastings Algorithm.
• 
  Akil Narayan, Claude Jeffrey Gittelson, Dongbin Xiu:
  A Stochastic Collocation Algorithm with Multifidelity Models.
• 
  Benjamin Ganis, Mika Juntunen, Gergina Pencheva, Mary F. Wheeler, Ivan Yotov:
  A Global Jacobian Method for Mortar Discretizations of Nonlinear Porous Media Flows.
• 
  Mark Ainsworth:
  Pyramid Algorithms for Bernstein-Bézier Finite Elements of High, Nonuniform Order in Any Dimension.
• 
  Simone Cacace, Emiliano Cristiani, Maurizio Falcone:
  Can Local Single-Pass Methods Solve Any Stationary Hamilton-Jacobi-Bellman Equation?
• 
  Edmond Chow, Yousef Saad:
  Preconditioned Krylov Subspace Methods for Sampling Multivariate Gaussian Distributions.
• 
  Jennifer A. Scott, Miroslav Tuma:
  On Positive Semidefinite Modification Schemes for Incomplete Cholesky Factorization.
• 
  Evangelia Kalligiannaki, Markos A. Katsoulakis, Petr Plechác:
  Spatial Two-Level Interacting Particle Simulations and Information Theory-Based Error Quantification.
• 
  Nathan Albin, Sureka Pathmanathan:
  Discrete Periodic Extension Using an Approximate Step Function.
• 
  Terry Haut, Beth A. Wingate:
  An Asymptotic Parallel-in-Time Method for Highly Oscillatory PDEs.
• 
  Mario Ohlberger, Kathrin Smetana:
  A Dimensional Reduction Approach Based on the Application of Reduced Basis Methods in the Framework of Hierarchical Model Reduction.
• 
  Axel Klawonn, Martin Lanser, Oliver Rheinbach:
  Nonlinear FETI-DP and BDDC Methods.
• 
  Eric C. Cyr, John N. Shadid, Tim Wildey:
  Approaches for Adjoint-Based A Posteriori Analysis of Stabilized Finite Element Methods.
• 
  Lisa J. Larsson, Rustum Choksi, Jean-Christophe Nave:
  An Iterative Algorithm for Computing Measures of Generalized Voronoi Regions.
• 
  Jing Li, Dongbin Xiu:
  Surrogate Based Method for Evaluation of Failure Probability under Multiple Constraints.
• 
  Robert C. Kirby:
  Low-Complexity Finite Element Algorithms for the de Rham Complex on Simplices.
• 
  Christian Bayer, Håkon Hoel, Erik von Schwerin, Raúl Tempone:
  On NonAsymptotic Optimal Stopping Criteria in Monte Carlo Simulations.

Computational Methods in Science and Engineering

• 
  Emanuel H. Rubensson, Anders M. N. Niklasson:
  Interior Eigenvalues from Density Matrix Expansions in Quantum Mechanical Molecular Dynamics.
• 
  Zhijian He, Xiaoqun Wang:
  Good Path Generation Methods in Quasi-Monte Carlo for Pricing Financial Derivatives.
• 
  Binghuai Lin, Dennis McLaughlin:
  Efficient Characterization of Uncertain Model Parameters with a Reduced-Order Ensemble Kalman Filter.
• 
  Silvia Gazzola, James G. Nagy:
  Generalized Arnoldi-Tikhonov Method for Sparse Reconstruction.
• 
  Jörg Grande:
  Eulerian Finite Element Methods for Parabolic Equations on Moving Surfaces.

Software and High-Performance Computing

• 
  Xiangrui Meng, Michael A. Saunders, Michael W. Mahoney:
  LSRN: A Parallel Iterative Solver for Strongly Over- or Underdetermined Systems.
• 
  M. Chanaud, Luc Giraud, David Goudin, Jean-Jacques Pesqué, Jean Roman:
  A Parallel Full Geometric Multigrid Solver for Time Harmonic Maxwell Problems.
• 
  Cosmin G. Petra, Olaf Schenk, Miles Lubin, Klaus Gärtner:
  An Augmented Incomplete Factorization Approach for Computing the Schur Complement in Stochastic Optimization.
• 
  Thomas Dickopf, Dorian Krause, Rolf Krause, Mark Potse:
  Design and Analysis of a Lightweight Parallel Adaptive Scheme for the Solution of the Monodomain Equation.
• 
  Santiago Badia, Alberto F. Martín, Javier Principe:
  A Highly Scalable Parallel Implementation of Balancing Domain Decomposition by Constraints.
• 
  Zbigniew Koza, Maciej Matyka, Sebastian Szkoda, Lukasz Miroslaw:
  Compressed Multirow Storage Format for Sparse Matrices on Graphics Processing Units.
• 
  Matthias Petschow, Enrique S. Quintana-Ortí, Paolo Bientinesi:
  Improved Accuracy and Parallelism for MRRR-Based Eigensolvers - A Mixed Precision Approach.

Volume 36, Number 3, 2014

Methods and Algorithms for Scientific Computing

• 
  Ting Gao, Jinqiao Duan, Xiaofan Li, Renming Song:
  Mean Exit Time and Escape Probability for Dynamical Systems Driven by Lévy Noises.
• 
  Li-Lian Wang, Michael Daniel Samson, Xiaodan Zhao:
  A Well-Conditioned Collocation Method Using a Pseudospectral Integration Matrix.
• 
  Zhonggui Chen, Wenping Wang, Bruno Lévy, Ligang Liu, Feng Sun:
  Revisiting Optimal Delaunay Triangulation for 3D Graded Mesh Generation.
• 
  Rémi Abgrall, Dante De Santis, Mario Ricchiuto:
  High-Order Preserving Residual Distribution Schemes for Advection-Diffusion Scalar Problems on Arbitrary Grids.
• 
  Antonio Cosmin Ionita, Athanasios C. Antoulas:
  Data-Driven Parametrized Model Reduction in the Loewner Framework.
• 
  Ignace Bogaert:
  Iteration-Free Computation of Gauss-Legendre Quadrature Nodes and Weights.
• 
  Michael Griebel, Alexander Hullmann:
  Dimensionality Reduction of High-Dimensional Data with a NonLinear Principal Component Aligned Generative Topographic Mapping.
• 
  Daniel Beylkin, Vladimir Rokhlin:
  Fitting a Bandlimited Curve to Points in a Plane.
• 
  James H. Adler, Panayot S. Vassilevski:
  Error Analysis for Constrained First-Order System Least-Squares Finite-Element Methods.
• 
  Lorenzo Tamellini, Olivier P. Le Maître, Anthony Nouy:
  Model Reduction Based on Proper Generalized Decomposition for the Stochastic Steady Incompressible Navier-Stokes Equations.
• 
  Lourenço Beirão da Veiga, Luca F. Pavarino, Simone Scacchi, Olof B. Widlund, Stefano Zampini:
  Isogeometric BDDC Preconditioners with Deluxe Scaling.
• 
  Rong-Qing Jia:
  Applications of Multigrid Algorithms to Finite Difference Schemes for Elliptic Equations with Variable Coefficients.
• 
  Jinglai Li, Youssef M. Marzouk:
  Adaptive Construction of Surrogates for the Bayesian Solution of Inverse Problems.
• 
  Francisco José Gaspar, Yvan Notay, Cornelis W. Oosterlee, Carmen Rodrigo:
  A Simple and Efficient Segregated Smoother for the Discrete Stokes Equations.
• 
  Nicholas Hale, Alex Townsend:
  An Algorithm for the Convolution of Legendre Series.
• 
  Traian Iliescu, Zhu Wang:
  Are the Snapshot Difference Quotients Needed in the Proper Orthogonal Decomposition?
• 
  Marcus J. Grote, Johannes Huber, Drosos Kourounis, Olaf Schenk:
  Inexact Interior-Point Method for PDE-Constrained Nonlinear Optimization.
• 
  Daniel Baffet, Thomas M. Hagstrom, Dan Givoli:
  Double Absorbing Boundary Formulations for Acoustics and Elastodynamics.
• 
  Paul Tranquilli, Adrian Sandu:
  Rosenbrock-Krylov Methods for Large Systems of Differential Equations.
• 
  Manuel Chiachío, James L. Beck, Juan Chiachío, Guillermo Rus:
  Approximate Bayesian Computation by Subset Simulation.

Computational Methods in Science and Engineering

• 
  Nguyen Trung Thành, Larisa Beilina, Michael V. Klibanov, Michael A. Fiddy:
  Reconstruction of the Refractive Index from Experimental Backscattering Data Using a Globally Convergent Inverse Method.
• 
  Sylvain Vallaghé, Anthony T. Patera:
  The Static Condensation Reduced Basis Element Method for a Mixed-Mean Conjugate Heat Exchanger Model.
• 
  James J. Brannick, Karsten Kahl:
  Bootstrap Algebraic Multigrid for the 2D Wilson Dirac system.
• 
  Francis Filbet, Chang Yang:
  Numerical Simulations of Kinetic Models for Chemotaxis.
• 
  Siegfried Cools, Bram Reps, Wim Vanroose:
  An Efficient Multigrid Calculation of the Far Field Map for Helmholtz and Schrödinger Equations.
• 
  Grady I. Lemoine, Miao-Jung Yvonne Ou:
  Finite Volume Modeling of Poroelastic-Fluid Wave Propagation with Mapped Grids.
• 
  Chad Lieberman, Karen Willcox:
  Nonlinear Goal-Oriented Bayesian Inference: Application to Carbon Capture and Storage.
• 
  Pingping Zeng, Yue Kuen Kwok:
  Pricing Barrier and Bermudan Style Options Under Time-Changed Lévy Processes: Fast Hilbert Transform Approach.
• 
  Clément Jourdana, Paola Pietra:
  A Hybrid Classical-Quantum Transport Model for the Simulation of Carbon Nanotube Transistors.
• 
  Ralf Zimmermann:
  A Locally Parametrized Reduced-Order Model for the Linear Frequency Domain Approach to Time-Accurate Computational Fluid Dynamics.
• 
  Michèle De La Chevrotière, Boualem Khouider, Andrew J. Majda:
  Calibration of the Stochastic Multicloud Model Using Bayesian Inference.
• 
  Mark B. Flegg, S. Jonathan Chapman, Likun Zheng, Radek Erban:
  Analysis of the Two-Regime Method on Square Meshes.
• 
  Thomas G. Fai, Boyce E. Griffith, Yoichiro Mori, Charles S. Peskin:
  Immersed Boundary Method for Variable Viscosity and Variable Density Problems Using Fast Constant-Coefficient Linear Solvers II: Theory.
• 
  Mattia Gazzola, Babak Hejazialhosseini, Petros Koumoutsakos:
  Reinforcement Learning and Wavelet Adapted Vortex Methods for Simulations of Self-propelled Swimmers.
• 
  C. R. Prins, J. H. M. ten Thije Boonkkamp, J. van Roosmalen, Wilbert L. IJzerman, Teus W. Tukker:
  A Monge-Ampère-Solver for Free-Form Reflector Design.

Software and High-Performance Computing

• 
  Xin Zhang, Jinwei Zhu, Zaiwen Wen, Aihui Zhou:
  Gradient Type Optimization Methods For Electronic Structure Calculations.
• 
  Shengguo Li, Ming Gu, Beresford N. Parlett:
  An Improved DQDS Algorithm.
• 
  Robert D. Falgout, Jacob B. Schroder:
  Non-Galerkin Coarse Grids for Algebraic Multigrid.

Volume 36, Number 4, 2014

Methods and Algorithms for Scientific Computing

• 
  Ulrich Rüde, Christian Waluga, Barbara I. Wohlmuth:
  Nested Newton Strategies for Energy-Corrected Finite Element Methods.
• 
  Karol Mikula, Mariana Remesíková, Peter Sarkoci, Daniel Sevcovic:
  Manifold Evolution with Tangential Redistribution of Points.
• 
  Jonas Ballani, Lars Grasedyck:
  Tree Adaptive Approximation in the Hierarchical Tensor Format.
• 
  Malena I. Español, Misha Elena Kilmer:
  A Wavelet-Based Multilevel Approach for Blind Deconvolution Problems.
• 
  Shujun Bi, Xiaolan Liu, Shaohua Pan:
  Exact Penalty Decomposition Method for Zero-Norm Minimization Based on MPEC Formulation.
• 
  Huayi Wei, Long Chen, Yunqing Huang, Bin Zheng:
  Adaptive Mesh Refinement and Superconvergence for Two-Dimensional Interface Problems.
• 
  Paul G. Constantine, Eric Dow, Qiqi Wang:
  Active Subspace Methods in Theory and Practice: Applications to Kriging Surfaces.
• 
  Noemi Petra, James Martin, Georg Stadler, Omar Ghattas:
  A Computational Framework for Infinite-Dimensional Bayesian Inverse Problems, Part II: Stochastic Newton MCMC with Application to Ice Sheet Flow Inverse Problems.
• 
  Sergio Blanes, Fernando Casas, Jesús María Sanz-Serna:
  Numerical Integrators for the Hybrid Monte Carlo Method.
• 
  Andreas Frommer, Karsten Kahl, Stefan Krieg, Björn Leder, Matthias Rottmann:
  Adaptive Aggregation-Based Domain Decomposition Multigrid for the Lattice Wilson-Dirac Operator.
• 
  Patrick Henning, Axel Målqvist:
  Localized Orthogonal Decomposition Techniques for Boundary Value Problems.
• 
  Braxton Osting, Chris D. White, Édouard Oudet:
  Minimal Dirichlet Energy Partitions for Graphs.
• 
  Zhongqiang Zhang, Michael V. Tretyakov, Boris Rozovskii, George E. Karniadakis:
  A Recursive Sparse Grid Collocation Method for Differential Equations with White Noise.
• 
  Artem Napov, Yvan Notay:
  Algebraic Multigrid for Moderate Order Finite Elements.
• 
  Anthony Pajot, Loïc Barthe, Mathias Paulin:
  Globally Adaptive Control Variate for Robust Numerical Integration.
• 
  Weidong Zhao, Yu Fu, Tao Zhou:
  New Kinds of High-Order Multistep Schemes for Coupled Forward Backward Stochastic Differential Equations.
• 
  Zhiqiang Xu, Tao Zhou:
  On Sparse Interpolation and the Design of Deterministic Interpolation Points.
• 
  Gilles Vilmart:
  Weak Second Order Multirevolution Composition Methods for Highly Oscillatory Stochastic Differential Equations with Additive or Multiplicative Noise.
• 
  Emmanuel Hanert, Cécile Piret:
  A Chebyshev PseudoSpectral Method to Solve the Space-Time Tempered Fractional Diffusion Equation.
• 
  Sheng-Gwo Chen, Jyh-Yang Wu:
  Discrete Conservation Laws on Curved Surfaces II: A Dual Approach.
• 
  Jean-Piero Suarez, Gustaaf B. Jacobs, Wai-Sun Don:
  A High-Order Dirac-Delta Regularization with Optimal Scaling in the Spectral Solution of One-Dimensional Singular Hyperbolic Conservation Laws.
• 
  Loïc Giraldi, Anthony Nouy, Grégory Legrain:
  Low-Rank Approximate Inverse for Preconditioning Tensor-Structured Linear Systems.
•