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ORCIDJournal of Bioinformatics and Computational Biology, Volume 20
Volume 20, Number 1, February 2022
- Fabrizio Angiulli, Teresa Colombo
, Fabio Fassetti, Angelo Furfaro, Paola Paci:
Mining sponge phenomena in RNA expression data. 2150022:1-2150022:27 - Yan Zhu, Shuwan Yin, Jia Zheng, Yixia Shi, Cangzhi Jia:
O-glycosylation site prediction for Homo sapiens by combining properties and sequence features with support vector machine. 2150029:1-2150029:15 - Daiane Aparecida Zuanetti, Luís Aparecido Milan:
A new Bayesian approach for QTL mapping of family data. 2150030:1-2150030:22 - Jingli Wu, Qi Zhang, Gaoshi Li:
Identification of cancer-related module in protein-protein interaction network based on gene prioritization. 2150031:1-2150031:20 - Xueheng Tong, Shuqi Liu, Jiawei Gu, Chunguo Wu, Yanchun Liang, Xiaohu Shi:
Amino acid environment affinity model based on graph attention network. 2150032:1-2150032:19 - Zhi-Zhong Chen, Fei Deng, Lusheng Wang:
Identifying duplications and lateral gene transfers simultaneously and rapidly. 2150033:1-2150033:26 - Xiaoyu Liu, Jingying Zhao, Sicong Li, Cai Wei, Shihang Wang, Xuanyu Xu, Yin Zheng, Xiangyu Deng, Wenliang Yuan, Xiaomin Zeng, Sihua Peng:
Clarifying real receptor binding site between coronavirus HCoV-HKU1 and 9-O-Ac-Sia based on molecular docking. 2150034:1-2150034:12 - Ming Cao, Qinke Peng, Ze-Gang Wei, Fei Liu, Yi-Fan Hou:
EdClust: A heuristic sequence clustering method with higher sensitivity. 2150036:1-2150036:23 - Laura Rebeca Jimenez-Gutierrez:
Female reproduction-specific proteins, origins in marine species, and their evolution in the animal kingdom. 2240001:1-2240001:19
Volume 20, Number 2, April 2022
- Akram Emdadi, Changiz Eslahchi:
Clinical drug response prediction from preclinical cancer cell lines by logistic matrix factorization approach. 2150035:1-2150035:21
- T. V. Koshlan, K. G. Kulikov:
Analysis to determine the effect of mutations on binding to small chemical molecules. 2240003:1-2240003:19
- Xuan Song, Hai Yun Gao, Karl Herrup, Ronald P. Hart:
Optimized splitting of mixed-species RNA sequencing data. 2250001:1-2250001:18 - Hang-Jin Yang, Yuxia Lei, Juan Wang, Xiang-Zhen Kong, Jin-Xing Liu, Ying-Lian Gao:
Tensor decomposition based on the potential low-rank and p-shrinkage generalized threshold algorithm for analyzing cancer multiomics data. 2250002:1-2250002:20 - Die Zhang, Shunfang Wang:
A protein succinylation sites prediction method based on the hybrid architecture of LSTM network and CNN. 2250003:1-2250003:18 - Peng Song, Sheng Zhou, Xiaoyang Qi, Yuwen Jiao, Yu Gong, Jie Zhao, Haojun Yang, Zhifen Qian, Jun Qian, Liming Tang:
RNA modification writers influence tumor microenvironment in gastric cancer and prospects of targeted drug therapy. 2250004:1-2250004:24 - Santhosh Amilpur, Raju Bhukya:
A sequence-based two-layer predictor for identifying enhancers and their strength through enhanced feature extraction. 2250005:1-2250005:16
Volume 20, Number 3, June 2022
- Sheng Chang, Lijun Shen, Linlin Li, Xi Chen, Hua Han:
Denoising of scanning electron microscope images for biological ultrastructure enhancement. 2250007:1-2250007:21 - X. Shao, W. Kong, Y. Li, S. Zhang:
Quantitative structure-activity relationship modeling reveals the minimal sequence requirement and amino acid preference of sirtuin-1's deacetylation substrates in diabetes mellitus. 2250008:1-2250008:18 - Jianli Liu, Deliang Zhou, Wen Jin:
Prediction of nucleosome dynamic interval based on long-short-term memory network (LSTM). 2250009:1-2250009:13 - Ensieh Khazaei, Ala Emrany, Mostafa Tavassolipour, Foroozandeh Mahjoubi, Ahmad Ebrahimi, Seyed Abolfazl Motahari:
Automated analysis of karyotype images. 2250011:1-2250011:15 - Qian Wang, Meiyu Duan, Yusi Fan, Shuai Liu, Yanjiao Ren, Lan Huang, Fengfeng Zhou:
Transforming OMIC features for classification using siamese convolutional networks. 2250013:1-2250013:23 - Omid Zarei, Stéphane L. Raeppel, Maryam Hamzeh-Mivehroud:
An alignment-independent three-dimensional quantitative structure-activity relationship study on ron receptor tyrosine kinase inhibitors. 2250015:1-2250015:14 - Mengqiu Sun, Shengnan She, Hengwei Chen, Jiaxi Cheng, Wei Ji, Dan Wang, Chunlai Feng:
Prediction model for synergistic anti-tumor multi-compound combinations from traditional Chinese medicine based on extreme gradient boosting, targets and gene expression data. 2250016:1-2250016:21
Volume 20, Number 4, August 2022
- Yun Zheng:
Introduction to Selected Papers from InCoB 2021. 2202001:1-2202001:2 - Qingting Wei, Hong Zou, Cuncong Zhong, Jianfeng Xu:
RPfam: A refiner towards curated-like multiple sequence alignments of the Pfam protein families. 2240002:1-2240002:15 - Sona Charles, Jeyakumar Natarajan:
Transcriptomic meta-analysis reveals biomarker pairs and key pathways in Tetralogy of Fallot. 2240004:1-2240004:15
- Xiuquan Du, Xiujuan Zhao, Yanping Zhang:
DeepBtoD: Improved RNA-binding proteins prediction via integrated deep learning. 2250006:1-2250006:30 - Andisheh Dadashi, Derek Martinez:
Flux balance network expansion predicts stage-specific human peri_implantation embryo metabolism. 2250010:1-2250010:19 - Nadia Tahiri, Andrey Veriga, Aleksandr Koshkarov, Boris Morozov:
Invariant transformers of Robinson and Foulds distance matrices for Convolutional Neural Network. 2250012:1-2250012:14 - Ali Burak Öncül, Yüksel Çelik, Necdet Mehmet Ünel, Mehmet Cengiz Baloglu:
bHLHDB: A next generation database of basic helix loop helix transcription factors based on deep learning model. 2250014:1-2250014:24 - Hongliang Zou:
iRNA5hmC-HOC: High-order correlation information for identifying RNA 5-hydroxymethylcytosine modification. 2250017:1-2250017:11 - Siddhartha Kundu:
TemporalGSSA: A numerically robust R-wrapper to facilitate computation of a metabolite-specific and simulation time-dependent trajectory from stochastic simulation algorithm (SSA)-generated datasets. 2250018:1-2250018:21
Volume 20, Number 5, October 2022
- Wajid Arshad Abbasi, Asma Anjam, Sadia Khalil, Saiqa Andleeb, Maryum Bibi, Syed Ali Abbas:
COYOTE: Sequence-derived structural descriptors-based computational identification of glycoproteins. 2250019:1-2250019:17 - Caijie Gao, Xu Zhao, Jianrong Fan:
Computational design and experimental confirmation of conformationally constrained peptides to compete with coactivators for pediatric PPARα by minimizing indirect readout effect. 2250020:1-2250020:15 - Gatis Melkus, Karlis Cerans, Karlis Freivalds, Lelde Lace, Darta Zajakina, Juris Viksna:
Behavioral dynamics of bacteriophage gene regulatory networks. 2250021:1-2250021:22 - Sarah-Laure Rincourt, Stefan Michiels, Damien Drubay:
A non-parametric Bayesian joint model for latent individual molecular profiles and survival in oncology. 2250022:1-2250022:28 - Jing Li, Chen Zhang, Zheng-Wei Li, Ru Nie, Pengyong Han, Wenjia Yang, Hongmei Liao:
GCMCDTI: Graph convolutional autoencoder framework for predicting drug-target interactions based on matrix completion. 2250023:1-2250023:18 - Babak Sokouti, Siavoush Dastmalchi, Maryam Hamzeh-Mivehroud:
The impact of simulation time in predicting binding free energies using end-point approaches. 2250024:1-2250024:18
Volume 20, Number 6, December 2022
- Adriana Laura López-Lobato, Martha Lorena Avendaño-Garrido, Héctor-Gabriel Acosta-Mesa, Clara Luz Sampieri, Víctor Hugo Sandoval Lozano:
Quantification of the presence of enzymes in gelatin zymography using the Gini index. 2250025:1-2250025:21 - Kano Hasegawa, Yoshitaka Moriwaki, Tohru Terada, Cao Wei, Kentaro Shimizu:
Feedback-AVPGAN: Feedback-guided generative adversarial network for generating antiviral peptides. 2250026:1-2250026:23 - Xin Huang, Benzhe Su, Xingyu Wang, Yang Zhou, Xinyu He, Bing Liu:
A network-based dynamic criterion for identifying prediction and early diagnosis biomarkers of complex diseases. 2250027:1-2250027:21
- Wei Xin Chan, Limsoon Wong:
Accounting for treatment during the development or validation of prediction models. 2271001:1-2271001:12
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