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International Journal of Bioinformatics Research and Applications, Volume 8
Volume 8, Numbers 1/2, 2012
- Paul W. Bible, Rasiah Loganantharaj:

A new algorithm for quantifying binding site pattern similarity with applications for Next Generation Sequencing. 4-17 - G. Priyadarshini, Rosy Das Sarmah

, B. Chakraborty, Dhruba Kumar Bhattacharyya
, Jugal K. Kalita:
An effective graph-based clustering technique to identify coherent patterns from gene expression data. 18-37 - Sheng Liu, Yixin Chen, Dawn Wilkins:

Large margin classifiers and Random Forests for integrated biological prediction. 38-53 - Davoud Moulavi, Mohsen Hajiloo, Jörg Sander

, Philip F. Halloran, Russell Greiner:
Combining gene expression and interaction network data to improve kidney lesion score prediction. 54-66 - David A. McClellan

:
Detecting molecular selection on single amino acid replacements. 67-80 - Jared D. Rickert, Todd A. Herpy, Haizhen Zhong, Guoqing Lu:

Computational analysis of adaptive antigenic mutations of the human influenza hemagglutinin for vaccine strain selection. 81-98 - William L. Duax, Robert Huether

, David Dziak:
Evolution of bacterial ribosomal protein L1. 99-111 - Smita Kolhe, Khushali Parikh:

Application of nanotechnology in cancer: a review. 112-125 - Jayakishan Meher

, Pramod Kumar Meher, Gananath Dash
, Mukesh Kumar Raval:
New encoded single-indicator sequences based on physico-chemical parameters for efficient exon identification. 126-140 - Mai S. Mabrouk:

Discovering best candidates for Hepatocellular Carcinoma (HCC) by in-silico techniques and tools. 141-152
Volume 8, Numbers 3/4, 2012
- Wilson Wen Bin Goh

, Yie Hou Lee, Zubaidah M. Ramdzan, Maxey C. M. Chung, Limsoon Wong
, Marek J. Sergot:
A network-based maximum link approach towards MS identifies potentially important roles for undetected ARRB1/2 and ACTB in liver cancer progression. 155-170 - Abu Zafer M. Dayem Ullah, Sudhakar Sahoo, Kathleen Steinhöfel

, Andreas Alexander Albrecht:
Derivative scores from site accessibility and ranking of miRNA target predictions. 171-191 - Wei-Chih Huang, Feng-Mao Lin, Tzu-Hao Chang

, Kuang-Wen Liao, Hsien-Da Huang:
Identifying cancer highly-expressed membrane receptors for targeted drug delivery. 192-209 - Yang Zhao, Morihiro Hayashida, Jose C. Nacher, Hiroshi Nagamochi, Tatsuya Akutsu

:
Protein complex prediction via improved verification methods using constrained domain-domain matching. 210-227 - Zhenhua Li

, Ying He
, Longbing Cao
, Limsoon Wong
, Jinyan Li:
Conservation of water molecules in protein binding interfaces. 228-244 - Yan-Xia Lin

:
The algorithm of equal acceptance region for detecting copy number alterations: applications to next-generation sequencing data. 245-262 - Sumit Kumar Jha

, Raj Gautam Dutta, Christopher James Langmead
, Susmit Jha
, Emily Sassano:
Synthesis of insulin pump controllers from safety specifications using Bayesian model validation. 263-285 - Sriganesh Srihari

, Hon Wai Leong:
Employing functional interactions for characterisation and detection of sparse complexes from yeast PPI networks. 286-304 - Hao Jiang, Wai-Ki Ching, Delin Chu:

Discriminant analysis in pairwise kernel learning for SVM classification. 305-321
Volume 8, Numbers 5/6, 2012
- Bongile Mzenda, Alexander E. Gegov, David J. Brown, Nedyalko Petrov:

Deriving margins in prostate cancer radiotherapy treatment: comparison of neural network and fuzzy logic models. 325-341 - Minoru Nakayama

, K. Yamamoto, F. Kobayashi:
Estimation of sleepiness using pupillary response and its frequency components. 342-365 - M. C. Barretto, D. A. Kulkarni, G. R. Udupi:

A texture analysis method for detection of clustered microcalcifications on digital mammograms. 366-381 - Kevin Curran

, Peng Yuan, Damien Coyle
:
Using acoustic sensors to discriminate between nasal and mouth breathing. 382-396 - Yi Zhang, Weidong Chen, Steven Weidong Su, Branko G. Celler

:
Nonlinear modelling and control for heart rate response to exercise. 397-416 - M. A. Saleem Durai

, D. P. Acharjya
, Arputharaj Kannan
, N. Ch. Sriman Narayana Iyengar
:
An intelligent knowledge mining model for kidney cancer using rough set theory. 417-435 - K. Thangavel, C. Velayutham:

Unsupervised feature selection in digital mammogram image using rough set theory. 436-454 - Lu Wang, Yi Zhang, Ying Guo, Tuan Nghia Nguyen

, Daoming Zhang, Branko G. Celler
:
A mathematical model of the cardiovascular system under graded exercise levels. 455-473

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