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ORCIDFrontiers in Neuroinformatics, Volume 11
Volume 11, 2017
- David Alexander Dickie
, Susan D. Shenkin, Devasuda Anblagan, Juyoung Lee, Manuel Blesa Cabez, David Rodriguez, James P. Boardman, Adam Waldman, Dominic Edward Job, Joanna M. Wardlaw:
Whole Brain Magnetic Resonance Image Atlases: A Systematic Review of Existing Atlases and Caveats for Use in Population Imaging. 1 - Ahmed Serag, Alastair G. Wilkinson, Emma J. Telford, Rozalia Pataky, Sarah A. Sparrow, Devasuda Anblagan, Gillian Macnaught, Scott Semple, James P. Boardman:
SEGMA: An Automatic SEGMentation Approach for Human Brain MRI Using Sliding Window and Random Forests. 2 - Inge A. Mulder, Artem Khmelinskii, Oleh Dzyubachyk, Sebastiaan de Jong, Nathalie Rieff, Marieke J. H. Wermer, Mathias Hoehn, Boudewijn P. F. Lelieveldt, Arn M. J. M. van den Maagdenberg:
Automated Ischemic Lesion Segmentation in MRI Mouse Brain Data after Transient Middle Cerebral Artery Occlusion. 3 - Hana Uhlirova, Peifang A. Tian, Kivilcim Kiliç, Martin Thunemann, Vishnu B. Sridhar, Hauke Bartsch, Anders M. Dale, Anna Devor, Payam A. Saisan:
Neurovascular Network Explorer 2.0: A Database of 2-Photon Single-Vessel Diameter Measurements from Mouse SI Cortex in Response To Optogenetic Stimulation. 4 - Tom Mingasson, Tanguy Duval, Nikola Stikov, Julien Cohen-Adad:
AxonPacking: An Open-Source Software to Simulate Arrangements of Axons in White Matter. 5 - Marc Cavazza, Gabor Aranyi, Fred Charles:
BCI Control of Heuristic Search Algorithms. 6 - Francisco Naveros, Jesús Alberto Garrido, Richard R. Carrillo, Eduardo Ros, Niceto R. Luque:
Event- and Time-Driven Techniques Using Parallel CPU-GPU Co-processing for Spiking Neural Networks. 7 - Juan Garcia-Prieto, Ricardo Bajo, Ernesto Pereda:
Efficient computation of functional brain networks: towards real-time functional connectivity. 8 - Ulf Großekathöfer, Nikolay V. Manyakov, Vojkan Mihajlovic, Gahan Pandina, Andrew Skalkin, Seth Ness, Abigail Bangerter, Matthew S. Goodwin:
Automated Detection of Stereotypical Motor Movements in Autism Spectrum Disorder Using Recurrence Quantification Analysis. 9 - Chaoyi Qin, Zheng Tan, Yali Pan, Yanyan Li, Lin Wang, Liankun Ren, Wenjing Zhou, Liang Wang:
Automatic and Precise Localization and Cortical Labeling of Subdural and Depth Intracranial Electrodes. 10 - Tiina Manninen, Riikka Havela, Marja-Leena Linne:
Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability. 11 - Nicholas J. Matiasz, Justin Wood, Wei Wang, Alcino J. Silva, William Hsu:
Computer-Aided Experiment Planning toward Causal Discovery in Neuroscience. 12 - Weiliang Chen, Erik De Schutter:
Parallel STEPS: Large Scale Stochastic Spatial Reaction-Diffusion Simulation with High Performance Computers. 13 - Alejandro O. Blenkmann, Holly N. Phillips, Juan P. Princich, James B. Rowe, Tristan A. Bekinschtein, Carlos H. Muravchik, Silvia Kochen:
iElectrodes: A Comprehensive Open-Source Toolbox for Depth and Subdural Grid Electrode Localization. 14 - Tarek Lajnef, Christian O'Reilly, Etienne Combrisson, Sahbi Chaibi, Jean-Baptiste Eichenlaub, Perrine Ruby, Pierre-Emmanuel Aguera, Mounir Samet, Abdennaceur Kachouri, Sonia Frenette, Julie Carrier, Karim Jerbi:
Meet Spinky: An Open-Source Spindle and K-Complex Detection Toolbox Validated on the Open-Access Montreal Archive of Sleep Studies (MASS). 15 - Zhuo Sun, Martijn van de Giessen, Boudewijn P. F. Lelieveldt, Marius Staring:
Detection of Conversion from Mild Cognitive Impairment to Alzheimer's Disease Using Longitudinal Brain MRI. 16 - Sijia Wang, Daniel J. Peterson, J. Christopher Gatenby, Wenbin Li, Thomas J. Grabowski, Tara M. Madhyastha:
Evaluation of Field Map and Nonlinear Registration Methods for Correction of Susceptibility Artifacts in Diffusion MRI. 17 - Antoine Grigis, David Goyard, Robin Cherbonnier, Thomas Gareau, Dimitri Papadopoulos-Orfanos, Nicolas Chauvat, Adrien Di Mascio, Gunter Schumann, Will Spooren, Declan G. M. Murphy, Vincent Frouin:
Neuroimaging, Genetics, and Clinical Data Sharing in Python Using the CubicWeb Framework. 18 - Jorge Munilla, Andrés Ortiz, Juan Manuel Górriz, Javier Ramírez, Alzheimer's Disease Neuroimaging Initiative:
Construction and Analysis of Weighted Brain Networks from SICE for the Study of Alzheimer's Disease. 19 - Holly E. Holmes, Nick M. Powell, Da Ma, Ozama Ismail, Ian F. Harrison, Jack A. Wells, Niall Colgan, James M. O'Callaghan, Ross A. Johnson, Tracey K. Murray, Zeshan Ahmed, Morten Heggenes, Alice Fisher, M. Jorge Cardoso, Marc Modat, Michael J. O'Neill, Emily C. Collins, Elizabeth M. C. Fisher, Sébastien Ourselin, Mark F. Lythgoe:
Comparison of In Vivo and Ex Vivo MRI for the Detection of Structural Abnormalities in a Mouse Model of Tauopathy. 20 - Jonathan Passerat-Palmbach, Romain Reuillon, Mathieu Leclaire, Antonios Makropoulos, Emma C. Robinson, Sarah Parisot, Daniel Rueckert:
Reproducible Large-Scale Neuroimaging Studies with the OpenMOLE Workflow Management System. 21 - Michael Halle, Valentin Demeusy, Ron Kikinis:
The Open Anatomy Browser: A Collaborative Web-Based Viewer for Interoperable Anatomy Atlases. 22 - Fermín Segovia, Juan Manuel Górriz, Javier Ramírez, Francisco Jesús Martínez-Murcia, Johannes Levin, Madeleine Schuberth, Matthias Brendel, Axel Rominger, Kai Bötzel, Gaëtan Garraux, Christophe Phillips:
Multivariate Analysis of 18F-DMFP PET Data to Assist the Diagnosis of Parkinsonism. 23 - Václav Papez, Roman Moucek:
Applying an Archetype-Based Approach to Electroencephalography/Event-Related Potential Experiments in the EEGBase Resource. 24 - Alexandre Savio, Michael Schutte, Manuel Graña, Igor Yakushev:
Pypes: Workflows for Processing Multimodal Neuroimaging Data. 25 - Po-Yen Chang, Ta-Shun Su, Chi-Tin Shih, Chung-Chuan Lo:
The Topographical Mapping in Drosophila Central Complex Network and Its Signal Routing. 26 - Christian O'Reilly, Elisabetta Iavarone, Sean L. Hill:
A Framework for Collaborative Curation of Neuroscientific Literature. 27 - Stavros I. Dimitriadis, Christos I. Salis, Ioannis Tarnanas, David E. J. Linden:
Topological Filtering of Dynamic Functional Brain Networks Unfolds Informative Chronnectomics: A Novel Data-Driven Thresholding Scheme Based on Orthogonal Minimal Spanning Trees (OMSTs). 28 - Arturo Martínez-Rodrigo, Alicia Fernández-Sotos, José Miguel Latorre, José Moncho-Bogani, Antonio Fernández-Caballero:
Neural Correlates of Phrase Rhythm: An EEG Study of Bipartite vs. Rondo Sonata Form. 29 - Tammo Ippen, Jochen M. Eppler, Hans E. Plesser, Markus Diesmann:
Constructing Neuronal Network Models in Massively Parallel Environments. 30 - Radhakrishnan Gnanasambandam, Morten S. Nielsen, Christopher Nicolai, Frederick Sachs, Johannes P. Hofgaard, Jakob K. Dreyer:
Unsupervised Idealization of Ion Channel Recordings by Minimum Description Length: Application to Human PIEZO1-Channels. 31 - Jorge L. Bernal-Rusiel, Nicolas Rannou, Randy L. Gollub, Steve Pieper, Shawn N. Murphy, Richard Robertson, Patricia Ellen Grant, Rudolph Pienaar:
Reusable Client-Side JavaScript Modules for Immersive Web-Based Real-Time Collaborative Neuroimage Visualization. 32 - Jan Gosmann, Chris Eliasmith:
Automatic Optimization of the Computation Graph in the Nengo Neural Network Simulator. 33 - Jan Hahne, David Dahmen, Jannis Schuecker, Andreas Frommer, Matthias Bolten, Moritz Helias, Markus Diesmann:
Integration of Continuous-Time Dynamics in a Spiking Neural Network Simulator. 34 - Hai Li, Lingzhong Fan, Junjie Zhuo, Jiaojian Wang, Yu Zhang, Zhengyi Yang, Tianzi Jiang:
ATPP: A Pipeline for Automatic Tractography-Based Brain Parcellation. 35 - Chiara Magliaro, Alejandro Luis Callara, Nicola Vanello, Arti Ahluwalia:
A Manual Segmentation Tool for Three-Dimensional Neuron Datasets. 36 - Vito Paolo Pastore, Daniele Poli, Aleksandar Godjoski, Sergio Martinoia, Paolo Massobrio:
Corrigendum: ToolConnect: A Functional Connectivity Toolbox for In vitro Networks. 37 - Juan Jose Garcia-Cantero, Juan P. Brito, Susana Mata, Sofía Bayona Beriso, Luis Pastor:
NeuroTessMesh: A Tool for the Generation and Visualization of Neuron Meshes and Adaptive On-the-Fly Refinement. 38 - Andrés Bueno-Crespo, Rosa-María Menchón-Lara, Raquel Martínez-España, José-Luis Sancho-Gómez:
Bioinspired Architecture Selection for Multitask Learning. 39 - Susanne Kunkel, Wolfram Schenck:
The NEST Dry-Run Mode: Efficient Dynamic Analysis of Neuronal Network Simulation Code. 40 - Carlos A. Caceres, Matthew J. Roos, Kyle Rupp, Griffin Milsap, Nathan E. Crone, Michael Wolmetz, Christopher R. Ratto:
Feature Selection Methods for Zero-Shot Learning of Neural Activity. 41 - Francois Rheault, Jean-Christophe Houde, Maxime Descoteaux:
Visualization, Interaction and Tractometry: Dealing with Millions of Streamlines from Diffusion MRI Tractography. 42 - Miguel C. Soriano, Guiomar Niso, Jillian M. Clements, Silvia Ortin, Sira Carrasco, María Gudín, Claudio R. Mirasso, Ernesto Pereda:
Automated Detection of Epileptic Biomarkers in Resting-State Interictal MEG Data. 43 - Martin Rückl, Stephen C. Lenzi, Laura Moreno-Velasquez, Daniel Parthier, Dietmar Schmitz, Sten Rüdiger, Friedrich W. Johenning:
SamuROI, a Python-Based Software Tool for Visualization and Analysis of Dynamic Time Series Imaging at Multiple Spatial Scales. 44 - Marisol Rodriguez-Ugarte, Eduardo Iáñez, Mario Ortíz, José Maria Azorín:
Personalized Offline and Pseudo-Online BCI Models to Detect Pedaling Intent. 45 - Ruben A. Tikidji-Hamburyan, Vikram K. Narayana, Zeki Bozkus, Tarek A. El-Ghazawi:
Software for Brain Network Simulations: A Comparative Study. 46 - Matthias Stangl, Jonathan Shine, Thomas Wolbers:
The GridCAT: A Toolbox for Automated Analysis of Human Grid Cell Codes in fMRI. 47 - Yinxue Wang, Guilai Shi, David J. Miller, Yizhi Wang, Congchao Wang, Gerard Broussard, Yue Wang, Lin Tian, Guoqiang Yu:
Automated Functional Analysis of Astrocytes from Chronic Time-Lapse Calcium Imaging Data. 48 - Bruno Cessac, Pierre Kornprobst, Selim Kraria, Hassan Nasser, Daniela Pamplona, Geoffrey Portelli, Thierry Viéville:
PRANAS: A New Platform for Retinal Analysis and Simulation. 49 - Bakul Gohel, Sanghyun Lim, Min-Young Kim, Hyukchan Kwon, Kiwoong Kim:
Approximate Subject Specific Pseudo MRI from an Available MRI Dataset for MEG Source Imaging. 50 - Inge A. Mulder, Artem Khmelinskii, Oleh Dzyubachyk, Sebastiaan de Jong, Marieke J. H. Wermer, Mathias Hoehn, Boudewijn P. F. Lelieveldt, Arn M. J. M. van den Maagdenberg:
MRI Mouse Brain Data of Ischemic Lesion after Transient Middle Cerebral Artery Occlusion. 51 - Jiseon Lee, Junhee Park, Sejung Yang, Hani Kim, Yun Seo Choi, Hyeon Jin Kim, Hyang Woon Lee, Byung-Uk Lee:
Early Seizure Detection by Applying Frequency-Based Algorithm Derived from the Principal Component Analysis. 52 - Yasamin Mokri, Rodrigo F. Salazar, Baldwin Goodell, Jonathan Baker, Charles M. Gray, Shih-Cheng Yen:
Sorting Overlapping Spike Waveforms from Electrode and Tetrode Recordings. 53 - Louis-Philippe Ledoux, Felix C. Morency, Martin Cousineau, Jean-Christophe Houde, Kevin Whittingstall, Maxime Descoteaux:
Fiberweb: Diffusion Visualization and Processing in the Browser. 54 - Weikai Li, Zhengxia Wang, Limei Zhang, Lishan Qiao, Dinggang Shen:
Remodeling Pearson's Correlation for Functional Brain Network Estimation and Autism Spectrum Disorder Identification. 55 - Pedro Gómez Vilda, Jirí Mekyska, José M. Ferrández, Daniel Palacios-Alonso, Andrés Gómez-Rodellar, María Victoria Rodellar Biarge, Zoltan Galaz, Zdenek Smékal, Ilona Eliasova, Milena Kostalova, Irena Rektorová:
Parkinson Disease Detection from Speech Articulation Neuromechanics. 56 - Santiago Timón-Reina, Mariano Rincón, Rafael Martínez-Tomás:
Extending XNAT Platform with an Incremental Semantic Framework. 57 - David Blaszka, Elischa Sanders, Jeffrey Riffell, Eli Shlizerman:
Classification of Fixed Point Network Dynamics from Multiple Node Timeseries Data. 58 - Muhammad Naveed Iqbal Qureshi, Jooyoung Oh, Dongrae Cho, Hang Joon Jo, Boreom Lee:
Multimodal Discrimination of Schizophrenia Using Hybrid Weighted Feature Concatenation of Brain Functional Connectivity and Anatomical Features with an Extreme Learning Machine. 59 - Etienne Combrisson, Raphael Vallat, Jean-Baptiste Eichenlaub, Christian O'Reilly, Tarek Lajnef, Aymeric Guillot, Perrine Ruby, Karim Jerbi:
Sleep: An Open-Source Python Software for Visualization, Analysis, and Staging of Sleep Data. 60 - Regina Meszlényi, Krisztián Búza, Zoltán Vidnyánszky:
Resting State fMRI Functional Connectivity-Based Classification Using a Convolutional Neural Network Architecture. 61 - Liberty S. Hamilton, David L. Chang, Morgan B. Lee, Edward F. Chang:
Semi-automated Anatomical Labeling and Inter-subject Warping of High-Density Intracranial Recording Electrodes in Electrocorticography. 62 - Tara M. Madhyastha, Natalie Koh, Trevor K. McAllister-Day, Moisés Hernández-Fernández, Austin Kelley, Daniel J. Peterson, Sabreena Rajan, Karl A. Woelfer, Jonathan Wolf, Thomas J. Grabowski:
Running Neuroimaging Applications on Amazon Web Services: How, When, and at What Cost? 63 - Antonio Fernández-Caballero, Elena Navarro, Patricia Fernández-Sotos, Pascual González, Jorge J. Ricarte-Trives, José Miguel Latorre, Roberto Rodríguez-Jiménez:
Human-Avatar Symbiosis for the Treatment of Auditory Verbal Hallucinations in Schizophrenia through Virtual/Augmented Reality and Brain-Computer Interfaces. 64 - Francisco Jesús Martínez-Murcia, Juan Manuel Górriz, Javier Ramírez, Ignacio A. Illán, Fermín Segovia, Diego Castillo-Barnes, Diego Salas-Gonzalez:
Functional Brain Imaging Synthesis Based on Image Decomposition and Kernel Modeling: Application to Neurodegenerative Diseases. 65 - Diego Castillo-Barnes, Ignacio Peis, Francisco Jesús Martínez-Murcia, Fermín Segovia, Ignacio A. Illán, Juan Manuel Górriz, Javier Ramírez, Diego Salas-Gonzalez:
A Heavy Tailed Expectation Maximization Hidden Markov Random Field Model with Applications to Segmentation of MRI. 66 - James F. Cavanagh, Arthur Napolitano, Christopher Wu, Abdullah Mueen:
The Patient Repository for EEG Data + Computational Tools (PRED+CT). 67 - Danilo Benozzo, Emanuele Olivetti, Paolo Avesani:
Supervised Estimation of Granger-Based Causality between Time Series. 68 - Fabien C. Y. Benureau, Nicolas P. Rougier:
Re-run, Repeat, Reproduce, Reuse, Replicate: Transforming Code into Scientific Contributions. 69 - László Szécsi, Ágota Kacsó, Günther Zeck, Péter Hantz:
Interactive Light Stimulus Generation with High Performance Real-Time Image Processing and Simple Scripting. 70 - Andoni Mujika, Peter Leskovský, Roberto Álvarez, Miguel A. Otaduy, Gorka Epelde:
Modeling Behavioral Experiment Interaction and Environmental Stimuli for a Synthetic C. elegans. 71 - Christoforos Christoforou, Timothy C. Papadopoulos, Fofi Constantinidou, Maria Theodorou:
Your Brain on the Movies: A Computational Approach for Predicting Box-office Performance from Viewer's Brain Responses to Movie Trailers. 72 - Claudio Román, Miguel Guevara, Ronald Valenzuela, Miguel E. Figueroa, Josselin Houenou, Delphine Duclap, Cyril Poupon, Jean-François Mangin, Pamela Guevara:
Clustering of Whole-Brain White Matter Short Association Bundles Using HARDI Data. 73 - Sreenath P. Kyathanahally, Yun Wang, Vince D. Calhoun, Gopikrishna Deshpande:
Investigation of True High Frequency Electrical Substrates of fMRI-Based Resting State Networks Using Parallel Independent Component Analysis of Simultaneous EEG/fMRI Data. 74 - Jeyashree Krishnan, PierGianLuca Porta Mana, Moritz Helias, Markus Diesmann, Edoardo Di Napoli:
Perfect Detection of Spikes in the Linear Sub-threshold Dynamics of Point Neurons. 75 - Hans E. Plesser:
Reproducibility vs. Replicability: A Brief History of a Confused Terminology. 76 - Javier Alegre-Cortés, Cristina Soto-Sánchez, Ana Lía Albarracín, Fernando Farfán, Mikel Val-Calvo, José M. Ferrández, Eduardo Fernández:
Toward an Improvement of the Analysis of Neural Coding. 77
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