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Computing in Science and Engineering, Volume 23
Volume 23, Number 1, January - February 2021
- Gabriel A. Wainer
, Konrad Hinsen
, Kelly P. Gaither:
Computational Science in the Battle Against COVID-19 - Part II. 5-6 - Josh Vincent Vermaas
, Ada Sedova
, Matthew B. Baker
, Swen Boehm
, David M. Rogers
, Jeff Larkin
, Jens Glaser
, Micholas Dean Smith
, Oscar R. Hernandez, Jeremy C. Smith
:
Supercomputing Pipelines Search for Therapeutics Against COVID-19. 7-16 - Andreas Tolk
, Christopher Glazner
, Joseph Ungerleider
:
Computational Decision Support for the COVID-19 Healthcare Coalition. 17-24 - Kelly A. Pierce
, Ethan Ho
, Xutong Wang, Remy Pasco
, Zhanwei Du, Greg Zynda, Jawon Song, Gordon Wells, Spencer J. Fox, Lauren Ancel Meyers:
Early COVID-19 Pandemic Modeling: Three Compartmental Model Case Studies From Texas, USA. 25-34 - Mariana Bergonzi, Ezequiel Pecker Marcosig
, Ernesto Kofman
, Rodrigo D. Castro
:
Discrete-Time Modeling of COVID-19 Propagation in Argentina with Explicit Delays. 35-45 - Spencer Smith
, Mojdeh Sayari Nejad, Alan Wassyng
, Jeffrey C. Carver, Karla Morris:
Raising the Bar: Assurance Cases for Scientific Software. 47-57 - Lorena A. Barba
, George K. Thiruvathukal:
Trustworthy Computational Evidence Through Transparency and Reproducibility. 58-64 - Sequoia Ploeg
, Hyrum Gunther, Ryan M. Camacho
:
Simphony: An Open-Source Photonic Integrated Circuit Simulation Framework. 65-74 - Ayan Biswas
, James P. Ahrens
, Soumya Dutta
, Jordan M. Musser
, Ann S. Almgren
, Terece L. Turton
:
Feature Analysis, Tracking, and Data Reduction: An Application to Multiphase Reactor Simulation MFiX-Exa for In-Situ Use Case. 75-82 - Micah D. Schuster
, Nargess Memarsadeghi:
Infection Modeling Case Study: Discrete Spatial Susceptible-Infected-Recovered Model. 83-88 - John West
, Kathryn M. Mohror, John M. Shalf
:
Large-Scale Scientific Computing in the Fight Against COVID-19. 89-92 - Andrea Mandanici
, Salvatore Alessandro Sarà, Giacomo Fiumara
, Giuseppe Mandaglio
, Sharon Broude Geva, Dirk Colbry:
Studying Physics, Getting to Know Python: RC Circuit, Simple Experiments, Coding, and Data Analysis With Raspberry Pi. 93-96 - Lisa M. Frehill
, Mary Ann E. Leung
:
Twitter Gone Wrong: How Constructive Dialog and Collaboration Enable Innovation. 97-101 - Anne C. Elster
, Volodymyr V. Kindratenko:
The European Factor: From ARM to Atos. 102-105 - Audrey Reinert
, Luke S. Snyder, Jieqiong Zhao, Andrew S. Fox, Dean F. Hougen
, Charles D. Nicholson, David S. Ebert:
Corrections to "Visual Analytics for Decision-Making During Pandemics". 106
Volume 23, Number 2, March - April 2021
- Hans Fangohr
, Thomas Kluyver
, Massimo DiPierro:
Jupyter in Computational Science. 5-6 - Brian E. Granger
, Fernando Pérez
:
Jupyter: Thinking and Storytelling With Code and Data. 7-14 - Stéphanie Juneau
, Knut Olsen
, Robert Nikutta
, Alice Jacques
, Stephen Bailey:
Jupyter-Enabled Astrophysical Analysis Using Data-Proximate Computing Platforms. 15-25 - Ryan Abernathey
, Tom Augspurger
, Anderson Banihirwe
, Charles C. Blackmon-Luca, Timothy J. Crone, Chelle L. Gentemann, Joseph Hamman
, Naomi Henderson, Chiara Lepore
, Theo A. McCaie
, Niall H. Robinson, Richard P. Signell
:
Cloud-Native Repositories for Big Scientific Data. 26-35 - Marijan Beg
, Juliette Taka, Thomas Kluyver
, Olexandr Konovalov
, Min Ragan-Kelly, Nicolas M. Thiéry
, Hans Fangohr
:
Using Jupyter for Reproducible Scientific Workflows. 36-46 - Blaine H. M. Mooers
:
A PyMOL Snippet Library for Jupyter to Boost Researcher Productivity. 47-53 - Aaron R. Watters
:
Shader-Like Computations in WebGL for Advanced Graphics and General Purposes. 54-63 - Xuanyi Lin
, Michelle Simon
, Zedong Peng
, Nan Niu
, Jeff Carver, Karla Morris:
Discovering Metamorphic Relations for Scientific Software From User Forums. 65-72 - Duncan A. Brown
, Karan Vahi
, Michela Taufer
, Von Welch
, Ewa Deelman
, Lorena A. Barba, George K. Thiruvathukal:
Reproducing GW150914: The First Observation of Gravitational Waves From a Binary Black Hole Merger. 73-82 - Soumya Dutta
, Terece L. Turton
, James P. Ahrens
:
A Confidence-Guided Technique for Tracking Time-Varying Features. 84-92 - Rollin C. Thomas
, Shreyas Cholia
, Kathryn M. Mohror, John M. Shalf:
Interactive Supercomputing With Jupyter. 93-98 - Jorge Piazentin Ono
, Juliana Freire
, Cláudio T. Silva
, João Comba, Kelly P. Gaither:
Interactive Data Visualization in Jupyter Notebooks. 99-106 - Chiin-Rui Tan
, Sharon Broude Geva, Dirk Colbry:
The Nascent Case for Adopting Jupyter Notebooks as a Pedagogical Tool for Interdisciplinary Humanities, Social Science, and Arts Education. 107-113 - Murali Emani
, Venkatram Vishwanath, Corey Adams, Michael E. Papka
, Rick Stevens, Laura Florescu, Sumti Jairath, William Liu, Tejas Nama, Arvind Sujeeth, Volodymyr V. Kindratenko, Anne C. Elster:
Accelerating Scientific Applications With SambaNova Reconfigurable Dataflow Architecture. 114-119
Volume 23, Number 3, May - June 2021
- Lorena A. Barba
:
The Python/Jupyter Ecosystem: Today's Problem-Solving Environment for Computational Science. 5-9 - John West
, Paul A. Navrátil, Maytal Dahan
, Matthew Vaughn
:
Large Scale Science on NSF's Frontera System. 10-13 - Leigh Orf
:
Modeling the World's Most Violent Thunderstorms. 14-24 - David E. DeMarle
, Andrew C. Bauer
:
In Situ Visualization With Temporal Caching. 25-33 - Stephen G. Yeager
, Ping Chang, Gokhan Danabasoglu
, James Edwards, Nan Rosenbloom, Qiuying Zhang, Dan Fu
, Xue Liu
, Fred Castruccio
:
Bringing the Future Into Focus: Benefits and Challenges of High-Resolution Global Climate Change Simulations. 34-41 - John Cazes
, Richard Todd Evans, Aaron Dubrow
, Lei Huang, Si Liu, Robert T. McLay:
Preparing Frontera for Texascale Days. 42-47 - Ganesh Balasubramanian
, Joydeep Munshi, Wei Chen, TeYu Chien:
Towards Improving the Efficiency of Organic Solar Cells by Coarse-Grained Atomistic Modeling of Processing Dependent Morphologies. 48-55 - William P. Reinhardt
:
Relationships Between the Zeros, Weights, and Weight Functions of Orthogonal Polynomials: Derivative Rule Conjecture (the DRC) Applied to Stieltjes and Spectral Imaging. 56-64 - Willem A. Smit
, Johan A. du Preez
, Guy A. E. Vandenbosch
:
Mobile Processor Energy Usage in the Scientific Environment. 65-72 - Patrick Diehl
, Dominic Marcello, Parsa Amini, Hartmut Kaiser
, Sagiv Shiber
, Geoffrey C. Clayton, Juhan Frank
, Gregor Daiß
, Dirk Pflüger
, David Eder, Alice Koniges
, Kevin A. Huck
:
Performance Measurements Within Asynchronous Task-Based Runtime Systems: A Double White Dwarf Merger as an Application. 73-81 - Mohammad Akhlaghi
, Raúl Infante-Sainz
, Boudewijn F. Roukema
, Mohammadreza Khellat
, David Valls-Gabaud
, Roberto Baena Gallé
, Lorena A. Barba, Sandra Gesing:
Toward Long-Term and Archivable Reproducibility. 82-91 - Anshu Dubey
, Konrad Hinsen:
Insights From the Software Design of a Multiphysics Multicomponent Scientific Code. 92-95 - Ann E. Jeffers
:
The COVID-19 Pandemic is Widening the Gap for Women in STEM. 96-98 - David S. Ebert
, Audrey Reinert, Brian D. Fisher
, João Comba, Kelly P. Gaither:
Visual Analytics Review: An Early and Continuing Success of Convergent Research With Impact. 99-108
Volume 23, Number 4, July - August 2021
- Lorena A. Barba
, Andreas Klöckner, Prabhu Ramachandran
, Rollin C. Thomas
:
Scientific Computing With Python on High-Performance Heterogeneous Systems. 5-7 - Jack D. Betteridge
, Patrick E. Farrell
, David A. Ham
:
Code Generation for Productive, Portable, and Scalable Finite Element Simulation in Firedrake. 8-17 - Timo Betcke
, Matthew W. Scroggs
:
Designing a High-Performance Boundary Element Library With OpenCL and Numba. 18-28 - Freddie D. Witherden
:
Python at Petascale With PyFR or: How I Learned to Stop Worrying and Love the Snake. 29-37 - John Bartlett, Chris Uchytil, Duane W. Storti
:
High-Productivity Parallelism With Python Plus Packages (But Without a Cluster). 38-46 - Lisandro Dalcín
, Yao-Lung L. Fang
:
mpi4py: Status Update After 12 Years of Development. 47-54 - Zachary J. Weiner
:
Stencil Solvers for PDEs on GPUs: An Example From Cosmology. 55-64 - Roberto Iacono
:
Bounding the Error Function. 65-68 - Michael A. Heroux, Jeffrey C. Carver, Karla Morris:
The Collegeville Workshops on Scientific Software: Looking Back and Forward. 69-72 - Michael Bauer, Wonchan Lee, Manolis Papadakis, Marcin Zalewski, Michael Garland, Konrad Hinsen, Anshu Dubey:
Supercomputing in Python With Legate. 73-79 - Gabriel A. Wainer
, Román Cárdenas
, Kevin Henares
, Cristina Ruiz Martin
, Nargess Memarsadeghi:
Modeling and Simulation of Space-Based Pandemic Scenarios Using an Open-Source Platform. 80-84 - Cyrille Rossant
, Nicolas P. Rougier, João Comba, Kelly P. Gaither:
High-Performance Interactive Scientific Visualization With Datoviz via the Vulkan Low-Level GPU API. 85-90 - William P. Reinhardt
:
Erratum to "Relationships Between the Zeros, Weights, and Weight Functions of Orthogonal Polynomials: Derivative Rule Conjecture (the DRC) Applied to Stieltjes and Spectral Imaging". 91
Volume 23, Number 5, September - October 2021
- Manish Parashar, David Abramson
:
Translational Computer Science for Science and Engineering. 5-6 - Douglas Doerfler, Steven Gottlieb
, William Gropp
, Barry I. Schneider
, Alan Sussman
:
Performance Portability for Advanced Architectures. 7-9 - Christian Trott
, Luc Berger-Vergiat
, David Poliakoff
, Sivasankaran Rajamanickam
, Damien Lebrun-Grandié
, Jonathan R. Madsen, Nader Al Awar
, Milos Gligoric, Galen M. Shipman, Geoff Womeldorff:
The Kokkos EcoSystem: Comprehensive Performance Portability for High Performance Computing. 10-18 - Patrick Schmitz
, Scott Yockel
, Claire Mizumoto
, Thomas E. Cheatham
, Dana Brunson
:
Advancing the Workforce That Supports Computationally and Data Intensive Research. 19-27 - S. John Pennycook
, Jason D. Sewall
, Douglas Jacobsen
, Tom Deakin
, Simon McIntosh-Smith
:
Navigating Performance, Portability, and Productivity. 28-38 - Michael Wolfe
:
Performant, Portable, and Productive Parallel Programming With Standard Languages. 39-45 - Anshu Dubey
, Lois Curfman McInnes
, Rajeev Thakur
, Erik W. Draeger
, Thomas M. Evans
, Timothy C. Germann
, William E. Hart:
Performance Portability in the Exascale Computing Project: Exploration Through a Panel Series. 46-54 - Beth A. Plale
, Tanu Malik, Line C. Pouchard, Lorena A. Barba, Sandra Gesing:
Reproducibility Practice in High-Performance Computing: Community Survey Results. 55-60 - Anshu Dubey
, Martin Berzins
, Carsten Burstedde
, Michael L. Norman, Didem Unat
, Mohamed Wahib:
Structured Adaptive Mesh Refinement Adaptations to Retain Performance Portability With Increasing Heterogeneity. 62-66 - Tessa Durham Brooks
, Raychelle Burks
, Mark M. Meysenburg
, Erin L. Doyle
, Chris Huber, Sharon Broude Geva, Dirk Colbry:
Building a Culture of Computing in the Sciences Using Images as Data Within a Community of Practice. 67-71
Volume 23, Number 6, November - December 2021
- Jaydeep P. Bardhan
, Mary Ann E. Leung, Eileen Martin, Amanda Randles
:
DOE Computational Science Graduate Fellowship Research Showcase. 5-8 - David L. Brown
, James Hack, Robert Voigt:
The Early Years and Evolution of the DOE Computational Science Graduate Fellowship Program. 9-15 - Allison H. Baker
:
On Preserving Scientific Integrity for Climate Model Data in the HPC Era. 16-24 - Julianne Chung
:
Research in Inverse Problems and Training in Computational Science: A Reflection on the Importance of Community. 25-33 - Mala L. Radhakrishnan
:
How to Model for a Living: The CSGF as a Catalyst for Supermodels. 34-41 - Eric C. Chi
:
Discovering Geometry in Data Arrays. 42-51 - Jarrod R. McClean
:
From Molecules to Quantum Computers: A Research Retrospective. 52-57 - Joseph Michael Barton
:
High Performance Computing for Science and Engineering in the Department of Defense. 58-62 - Bradley W. Settlemyer
, George Amvrosiadis
, Philip H. Carns
, Robert B. Ross
, Kathryn M. Mohror, John M. Shalf:
It's Time to Talk About HPC Storage: Perspectives on the Past and Future. 63-68 - Mark C. Miller
, Mary Ann E. Leung, Ann E. Jeffers
:
Inclusivity Bugs and the Language We Use. 69-71 - Miriam Leeser
, Suranga Handagala
, Michael Zink
, Volodymyr V. Kindratenko, Anne C. Elster:
FPGAs in the Cloud. 72-76 - Timothy G. Mattson
, Todd A. Anderson
, Giorgis Georgakoudis
, Konrad Hinsen, Anshu Dubey:
PyOMP: Multithreaded Parallel Programming in Python. 77-80

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