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ORCIDComputer Physics Communications, Volume 184
Volume 184, Number 1, January 2013
- Fuyuki Shimojo, Satoshi Ohmura
, Weiwei Mou, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta:
Large nonadiabatic quantum molecular dynamics simulations on parallel computers. 1-8
- Weile Jia, Zongyan Cao, Long Wang, Jiyun Fu, Xuebin Chi, Weiguo Gao, Lin-Wang Wang:
The analysis of a plane wave pseudopotential density functional theory code on a GPU machine. 9-18 - Katherine Baker, Andrij Baumketner, Yuchun Lin, Shaozhong Deng, Donald Jacobs, Wei Cai:
ICSM: An order N method for calculating electrostatic interactions added to TINKER. 19-26 - Evangelos Voyiatzis:
Mechanical properties and elastic constants of atomistic systems through the stress-fluctuation formalism. 27-33 - Tarcísio M. Rocha Filho:
Solving the Vlasov equation for one-dimensional models with long range interactions on a GPU. 34-39 - Yukihiro Komura, Yutaka Okabe:
Multi-GPU-based Swendsen-Wang multi-cluster algorithm for the simulation of two-dimensional q-state Potts model. 40-44 - Eliseo García, Lorena Lozano, María Jesús Algar, M. Felipe Cátedra:
A study of the efficiency of the parallelization of a high frequency electromagnetic approach for the computation of radiation and scattering considering multiple bounces. 45-50 - Changfeng Xue, Shaozhong Deng:
Coulomb Green's function and image potential near a planar diffuse interface, revisited. 51-59 - Bin Lin:
Parametric cubic spline method for the solution of the nonlinear Schrödinger equation. 60-65 - T. D. Young, Eloy Romero, José E. Román:
Parallel finite element density functional computations exploiting grid refinement and subspace recycling. 66-72 - Liang Li, Ting-Zhu Huang, Guang-hui Cheng, Yan-Fei Jing, Zhi-Gang Ren, Hou-Biao Li:
Solution to 3-D electromagnetic problems discretized by a hybrid FEM/MOM method. 73-78 - Paolo Greppi, Elisabetta Arato:
Efficient computation paths for the systematic analysis of sensitivities. 79-85 - Dingwen Deng, Chengjian Zhang:
A family of new fourth-order solvers for a nonlinear damped wave equation. 86-101 - Yutaka Utsuno, Noritaka Shimizu, Takaharu Otsuka, Takashi Abe:
Efficient computation of Hamiltonian matrix elements between non-orthogonal Slater determinants. 102-108 - Andreas Windisch, Reinhard Alkofer, Gundolf Haase, Manfred Liebmann:
Examining the analytic structure of Green's functions: Massive parallel complex integration using GPUs. 109-116 - Takumi Doi, Michael G. Endres:
Unified contraction algorithm for multi-baryon correlators on the lattice. 117-123 - Nuno Cardoso, Paulo J. Silva, Pedro Bicudo, Orlando Oliveira:
Landau gauge fixing on GPUs. 124-129
- Yezhi Lin, Yinping Liu, Zhibin Li:
Symbolic computation of analytic approximate solutions for nonlinear fractional differential equations. 130-141 - Gianluca Colò, Ligang Cao, Nguyen Van Giai, Luigi Capelli:
Self-consistent RPA calculations with Skyrme-type interactions: The skyrme_rpa program. 142-161 - Juan J. Galiana-Merino, Julio L. Rosa-Herranz, Sergio Rosa-Cintas, Juan J. Martinez-Espla:
SeismicWaveTool: Continuous and discrete wavelet analysis and filtering for multichannel seismic data. 162-171 - I. I. Gontchar, M. V. Chushnyakova:
A C-code for the double folding interaction potential for reactions involving deformed target nuclei. 172-182 - Alexander P. Bakulev, Vyacheslav L. Khandramai:
FAPT: A Mathematica package for calculations in QCD Fractional Analytic Perturbation Theory. 183-193 - O. Coufal:
A method for the accurate and smooth approximation of standard thermodynamic functions. 194-200 - Graham R. Dennis, Joseph J. Hope, Mattias T. Johnsson:
XMDS2: Fast, scalable simulation of coupled stochastic partial differential equations. 201-208 - Seth Quackenbush, Ryan Gavin, Ye Li, Frank Petriello:
W physics at the LHC with FEWZ 2.1. 209-214 - Roman A. Sen'kov, Mihai Horoi, Vladimir G. Zelevinsky:
A high-performance Fortran code to calculate spin- and parity-dependent nuclear level densities. 215-221 - Eric Conte, Benjamin Fuks, Guillaume Serret:
MadAnalysis 5, a user-friendly framework for collider phenomenology. 222-256
- Jaroslaw Adam Miszczak:
Employing online quantum random number generators for generating truly random quantum states in Mathematica. 257-258
Volume 184, Number 2, February 2013
- João Antônio Plascak, P. H. L. Martins:
Probability distribution function of the order parameter: Mixing fields and universality. 259-269
- Satrajit Adhikari, António J. C. Varandas:
The coupled 3D wave packet approach for triatomic reactive scattering in hyperspherical coordinates. 270-283 - C. Devi Sudheer, S. Krishnan, Ashok Srinivasan, P. R. C. Kent:
Dynamic load balancing for petascale quantum Monte Carlo applications: The Alias method. 284-292 - O. Sauter, S. Yu. Medvedev:
Tokamak coordinate conventions: COCOS. 293-302 - Dongling Wang, Aiguo Xiao, Xueyang Li:
Parametric symplectic partitioned Runge-Kutta methods with energy-preserving properties for Hamiltonian systems. 303-310 - Jochen Gerhard, Volker Lindenstruth, Marcus Bleicher:
Relativistic hydrodynamics on graphic cards. 311-319 - Igor V. Sokolov:
Alternating-order interpolation in a charge-conserving scheme for particle-in-cell simulations. 320-328 - Massimo Bernaschi, Mauro Bisson, Massimiliano Fatica, Simone Melchionna, Sauro Succi:
Petaflop hydrokinetic simulations of complex flows on massive GPU clusters. 329-341 - Jin-Chun Li, Ping Qian, Zhen-Feng Zhang, Ying Liu, Xiao-Jian Yuan, Jiang Shen, Nan-Xian Chen:
Theoretical study of structure and lattice vibrations of R3Co11-xFexB4 (R=Nd, Gd). 342-347 - Hong Jiang, Ricardo I. Gómez-Abal, Xin-Zheng Li, Christian Meisenbichler, Claudia Ambrosch-Draxl, Matthias Scheffler:
FHI-gap: A GW code based on the all-electron augmented plane wave method. 348-366 - Jun Liu:
Least square based method for obtaining one-particle spectral functions from temperature Green functions. 367-373 - Scott Le Grand, Andreas W. Götz, Ross C. Walker:
SPFP: Speed without compromise - A mixed precision model for GPU accelerated molecular dynamics simulations. 374-380 - Zhi Shang:
Performance analysis of large scale parallel CFD computing based on Code_Saturne. 381-386 - Yaroslav Pavlyukh, Jamal Berakdar:
Electron repulsion integrals for self-energy calculations. 387-395
- Sophia Borowka, Jonathon Carter, Gudrun Heinrich:
Numerical evaluation of multi-loop integrals for arbitrary kinematics with SecDec 2.0. 396-408 - Saulius Mickevicius, Darius Germanas, Ramutis Kazys Kalinauskas:
Revised calculation of four-particle harmonic-oscillator transformation brackets matrix. 409-413 - Rostislav Chudoba, Václav Sadílek, R. Rypl, Miroslav Vorechovský:
Using Python for scientific computing: Efficient and flexible evaluation of the statistical characteristics of functions with multivariate random inputs. 414-427 - Victor Zlokazov, Vladimir Utyonkov, Yury Tsyganov:
VSHEC - A program for the automatic spectrum calibration. 428-431 - Mikhail S. Litsarev:
The DEPOSIT computer code: Calculations of electron-loss cross-sections for complex ions colliding with neutral atoms. 432-439
- Aleksander Jablonski:
Improved algorithm for calculating the Chandrasekhar function. 440-442 - Celestino Angeli, Renzo Cimiraglia:
Automated evaluation of matrix elements between contracted wavefunctions: A Mathematica version of the FRODO program. 443-444
Volume 184, Number 3, March 2013
- Rio Yokota, Lorena A. Barba, Tetsu Narumi, Kenji Yasuoka:
Petascale turbulence simulation using a highly parallel fast multipole method on GPUs. 445-455 - Simon Portegies Zwart, Stephen L. W. McMillan, Arjen van Elteren, F. Inti Pelupessy, Nathan de Vries:
Multi-physics simulations using a hierarchical interchangeable software interface. 456-468 - Jorge Francés, Sergio Bleda, Cristian Neipp, Augusto Márquez, Inmaculada Pascual, Augusto Beléndez:
Performance analysis of the FDTD method applied to holographic volume gratings: Multi-core CPU versus GPU computing. 469-479 - Jing Shen, Wei E. I. Sha, Zhixiang Huang, Mingsheng Chen, Xianliang Wu:
High-order symplectic FDTD scheme for solving a time-dependent Schrödinger equation. 480-492 - B.-W. Jeng, Y.-S. Wang, C.-S. Chien:
A two-parameter continuation algorithm for vortex pinning in rotating Bose-Einstein condensates. 493-508 - Nuno Cardoso, Pedro Bicudo:
Generating pure gauge lattice QCD configurations on GPUs with CUDA. 509-518 - Martin Lüscher, Stefan Schaefer:
Lattice QCD with open boundary conditions and twisted-mass reweighting. 519-528 - Ali Shokri, Abbas Ali Shokri:
The new class of implicit L-stable hybrid Obrechkoff method for the numerical solution of first order initial value problems. 529-531 - Florian De Vuyst, Francesco Salvarani:
GPU-accelerated numerical simulations of the Knudsen gas on time-dependent domains. 532-536 - Marco D. Mazzeo:
Fast discontinuous Galerkin lattice-Boltzmann simulations on GPUs via maximal kernel fusion. 537-549 - Hossein Ebadi:
Bound state calculation of two-component Klein-Gordon equation with Damped-Relaxation technique. 550-556 - Baoming Tang, Ehsan Khatami, Marcos Rigol:
A short introduction to numerical linked-cluster expansions. 557-564 - Zohreh Asgari, S. Mohammed Hosseini:
Numerical solution of two-dimensional sine-Gordon and MBE models using Fourier spectral and high order explicit time stepping methods. 565-572 - Antonio Brunetti:
A fast fine-grained genetic algorithm for spectrum fitting: An application to X-ray spectra. 573-578 - Mohankumar Nandagopal, Ajay Rawat:
Some comments on the evaluation of the Chandrasekhar H function. 579-581 - K. Parand, J. A. Rad:
Kansa method for the solution of a parabolic equation with an unknown spacewise-dependent coefficient subject to an extra measurement. 582-595 - Hai P. Le, Jean-Luc Cambier, Lord K. Cole:
GPU-based flow simulation with detailed chemical kinetics. 596-606 - D. W. L. Sprung, M. I. Betti, W. van Dijk:
Finite Fourier transforms computed by a modified Filon-Euler-Maclaurin method. 607-616 - José M. Domínguez, Alejandro J. C. Crespo, Moncho Gómez-Gesteira:
Optimization strategies for CPU and GPU implementations of a smoothed particle hydrodynamics method. 617-627 - Edan Lerner, Gustavo Düring, Matthieu Wyart:
Simulations of driven overdamped frictionless hard spheres. 628-637 - Andreas Galonska, Paul Gibbon, Frederic Imbeaux, Yann Frauel, Bernard Guillerminet, Gabriele Manduchi, Felix Wolf:
Parallel universal access layer: A scalable I/O library for integrated tokamak modeling. 638-646 - S. J. Ahmed, J. Kivinen, B. Zaporzan, Laura Curiel, Samuel Pichardo, Oleg Rubel:
BerryPI: A software for studying polarization of crystalline solids with WIEN2k density functional all-electron package. 647-651 - Mohammad Poursina, Kurt S. Anderson:
Canonical ensemble simulation of biopolymers using a coarse-grained articulated generalized divide-and-conquer scheme. 652-660 - Roberto da Silva, Mendeli H. Vainstein, Luís C. Lamb, Sandra D. Prado:
A simple non-Markovian computational model of the statistics of soccer leagues: Emergence and scaling effects. 661-670 - G. Lanzafame:
Implicit integrations for SPH in semi-Lagrangian approach: Application to the accretion disc modeling in a microquasar. 671-688 - Chris Johnson, A. D. Kennedy:
Numerical determination of partial spectrum of Hermitian matrices using a Lánczos method with selective reorthogonalization. 689-697 - L. Basso, Alexander Belyaev, Debtosh Chowdhury, Martin Hirsch, S. Khalil, Stefano Moretti, B. O'Leary, Werner Porod, Florian Staub:
Proposal for generalised supersymmetry Les Houches Accord for see-saw models and PDG numbering scheme. 698-719 - Mariano Álvaro, Elena Cebrián, Manuel Carretero, Luis L. Bonilla:
Numerical methods for kinetic equations in semiconductor superlattices. 720-731 - Antonio Souto-Iglesias, Fabricio Macià, Leo M. González, Jose L. Cercos-Pita:
On the consistency of MPS. 732-745 - Enrique Comesaña, Manuel Aldegunde, Antonio J. García-Loureiro:
Simulation of the spin polarization and the charge transport in Zener tunnel junctions based on ferromagnetic GaAs and ZnO. 746-756 - Dieter Bingemann:
Statistical identification of structural rearrangement events in molecular dynamics trajectories. 757-764 - Hanping Hu, Lingfeng Liu, Nai Da Ding:
Pseudorandom sequence generator based on the Chen chaotic system. 765-768
- P. J. J. Luukko, Eero Räsänen:
Imaginary time propagation code for large-scale two-dimensional eigenvalue problems in magnetic fields. 769-776 - Giovanni Luca Masala, Bruno Golosio, Piernicola Oliva:
An improved Marching Cube algorithm for 3D data segmentation. 777-782 - Ashton S. Reimer, Alexei F. Cheviakov:
A Matlab-based finite-difference solver for the Poisson problem with mixed Dirichlet-Neumann boundary conditions. 783-798 - Jacek Kobus:
A finite difference Hartree-Fock program for atoms and diatomic molecules. 799-811 - Marco Caliari, Stefan Rainer:
GSGPEs: A MATLAB code for computing the ground state of systems of Gross-Pitaevskii equations. 812-823 - Jan Broeckhove, Kurt Vanmechelen:
An adaptor for C++ callbacks with C and Fortran libraries. 824-832 - Yury V. Suleimanov, J. W. Allen, W. H. Green:
RPMDrate: Bimolecular chemical reaction rates from ring polymer molecular dynamics. 833-840 - Martin Hoefling, Helmut Grubmüller:
In silico FRET from simulated dye dynamics. 841-852 - Y. G. Chen, J. B. Wang:
Qcompiler: Quantum compilation with the CSD method. 853-865 - Richard Marchand, David Purschke, J. Samson:
LEOrbit: A program to calculate parameters relevant to modeling Low Earth Orbit spacecraft-plasma interaction. 866-872 - David A. Bonhommeau, Marie-Pierre Gaigeot:
MCMC2 : A Monte Carlo code for multiply-charged clusters. 873-884 - Carl McBride, Eva G. Noya, Carlos Vega:
A computer program to evaluate the NVM propagator for rigid asymmetric tops for use in path integral simulations of rigid bodies. 885-890 - Raoul D. Schram, Gerard T. Barkema, Rob H. Bisseling:
SAWdoubler: A program for counting self-avoiding walks. 891-898 - Debtosh Chowdhury, Raghuveer Garani, Sudhir K. Vempati:
SuSeFLAV 1.2: Program for supersymmetric mass spectra with seesaw mechanism and rare lepton flavor violating decays. 899-918 - Borut Paul Kersevan, Elzbieta Richter-Was:
The Monte Carlo event generator AcerMC versions 2.0 to 3.8 with interfaces to PYTHIA 6.4, HERWIG 6.5 and ARIADNE 4.1. 919-985 - Giuseppe Bevilacqua, Michal Czakon, M. V. Garzelli, Andreas van Hameren, Adam Kardos, Costas G. Papadopoulos, R. Pittau, Malgorzata Worek:
HELAC-NLO. 986-997 - Oliver Brein, Robert V. Harlander, Tom J. E. Zirke:
vh@nnlo - Higgs Strahlung at hadron colliders. 998-1003 - Andreas Crivellin, Janusz Rosiek, P. H. Chankowski, A. Dedes, S. Jäger, Philip Tanedo:
SUSY_FLAVOR v2: A computational tool for FCNC and CP-violating processes in the MSSM. 1004-1032 - Lorenzo Botto:
A geometric multigrid Poisson solver for domains containing solid inclusions. 1033-1044 - G. F. Jefferson, J. Carminati:
ASP: Automated symbolic computation of approximate symmetries of differential equations. 1045-1063 - B. Azadegan:
A Mathematica package for calculation of planar channeling radiation spectra of relativistic electrons channeled in a diamond-structure single crystal (quantum approach). 1064-1069
- Xian-You Wang, Xing-Gang Wu:
GENXICC2.1: An improved version of GENXICC for hadronic production of doubly heavy baryons. 1070-1074 - Alexei Bazavov, Bernd A. Berg:
Program package for multicanonical simulations of U(1) lattice gauge theory - Second version. 1075-1076
Volume 184, Number 4, April 2013
- T. H. Cho, Wan-Sheng Su, T. C. Leung, Wei Ren, C. T. Chan:
Electronic and optical properties of bundled single-walled carbon nanotubes investigated by the first-principles method. 1077-1085 - Sergio Andres Galindo-Torres, A. Scheuermann, Ling Li, D. M. Pedroso, D. J. Williams:
A Lattice Boltzmann model for studying transient effects during imbibition-drainage cycles in unsaturated soils. 1086-1093 - Shamsul Qamar, Sidrah Ahmed:
The space-time CE/SE method for solving one-dimensional special relativistic magnetohydrodynamics equations. 1094-1105 - Lin Zhang, Jie Ouyang, Xiaohua Zhang:
The variational multiscale element free Galerkin method for MHD flows at high Hartmann numbers. 1106-1118 - Yaser Afshar, Friederike Schmid, Ahmadreza Pishevar, S. Worley:
Exploiting seeding of random number generators for efficient domain decomposition parallelization of dissipative particle dynamics. 1119-1128 - Jonathan D. Halverson, Thomas Brandes, Olaf Lenz, Axel Arnold, Stas Bevc, Vitaliy Starchenko, Kurt Kremer, Torsten Stuehn, Dirk Reith:
ESPResSo++: A modern multiscale simulation package for soft matter systems. 1129-1149 - Hong Fu, Limin Zheng, Minghui Yang:
Accelerating modified Shepard interpolated potential energy calculations using graphics processing units. 1150-1154 - Johannes Zierenberg, Martin Marenz, Wolfhard Janke:
Scaling properties of a parallel implementation of the multicanonical algorithm. 1155-1160 - Yong Zhang, Ting-Zhu Huang, Wei Shao, Sheng-Jian Lai:
Some new strategies for RCM ordering in solving electromagnetic scattering problems. 1161-1164 - Peter Wittek, Fernando M. Cucchietti:
A second-order distributed Trotter-Suzuki solver with a hybrid CPU-GPU kernel. 1165-1171 - Andriy O. Lyakhov, Artem R. Oganov, Harold T. Stokes, Qiang Zhu:
New developments in evolutionary structure prediction algorithm USPEX. 1172-1182 - Markus Hopfer, Reinhard Alkofer, Gundolf Haase:
Solving the ghost-gluon system of Yang-Mills theory on GPUs. 1183-1190 - Carlos Teijeiro, Godehard Sutmann, Guillermo L. Taboada, Juan Touriño:
Parallel Brownian dynamics simulations with the message-passing and PGAS programming models. 1191-1202 - Gabor Demeter: