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ORCIDComputational Biology and Chemistry, Volume 59
Volume 59, Part A, December 2015
- Ricardo Corral-Corral, Edgar Chávez, Gabriel del Rio:
Machine Learnable Fold Space Representation based on Residue Cluster Classes. 1-7 - Tapati Sarkar, Sukhen Das
, Antara De, Papiya Nandy, Shiladitya Chattopadhyay, Mamta Chawla-Sarkar, Ashesh Nandy:
H7N9 influenza outbreak in China 2013: In silico analyses of conserved segments of the hemagglutinin as a basis for the selection of peptide vaccine targets. 8-15 - Andrzej Kowalski:
Abundance of intrinsic structural disorder in the histone H1 subtypes. 16-27 - Md. Kishwar Shafin, Kazi Lutful Kabir, Iffatur Ridwan, Tasmiah Tamzid Anannya, Rashid Saadman Karim, Mohammad Mozammel Hoque, M. Sohel Rahman:
Impact of heuristics in clustering large biological networks. 28-36 - Kunal Patel, Chetna Tyagi, Sukriti Goyal, Salma Jamal, Divya Wahi, Ritu Jain, Navneeta Bharadvaja, Abhinav Grover:
Identification of chebulinic acid as potent natural inhibitor of M. tuberculosis DNA gyrase and molecular insights into its binding mode of action. 37-47 - Esmat Fazel-Najafabadi, Elham Vahdat Ahar, Shirin Fattahpour, Maryam Sedghi:
Structural and functional impact of missense mutations in TPMT: An integrated computational approach. 48-55 - Rakesh Manuka, Ankush Ashok Saddhe, Kundan Kumar:
Genome-wide identification and expression analysis of WNK kinase gene family in rice. 56-66 - Mohd. Shahbaaz, Krishna Bisetty, Faizan Ahmad, Md. Imtaiyaz Hassan:
In silico approaches for the identification of virulence candidates amongst hypothetical proteins of Mycoplasma pneumoniae 309. 67-80 - S. Raghavendra, S. J. Aditya Rao, Vadlapudi Kumar, C. K. Ramesh:
Multiple ligand simultaneous docking (MLSD): A novel approach to study the effect of inhibitors on substrate binding to PPO. 81-86 - Mayank Rashmi, D. Swati:
In silico drug re-purposing against African sleeping sickness using GlcNAc-PI de-N-acetylase as an experimental target. 87-94 - Xiaowei Li, Taigang Liu, Peiying Tao, Chunhua Wang, Lanming Chen:
A highly accurate protein structural class prediction approach using auto cross covariance transformation and recursive feature elimination. 95-100 - Abhigyan Nath, Karthikeyan Subbiah:
Maximizing lipocalin prediction through balanced and diversified training set and decision fusion. 101-110 - Vasiliki Tasiopoulou, Dimitrios Magouliotis, Evgeniy I. Solenov, Georgios Vavougios, Paschalis-Adam Molyvdas, Konstantinos I. Gourgoulianis, Chrissi Hatzoglou, Sotirios G. Zarogiannis:
Transcriptional over-expression of chloride intracellular channels 3 and 4 in malignant pleural mesothelioma. 111-116 - Adolfo Flores Saiffe Farías, Enrique Jaime Herrera-López, Cristopher Jorge Moreno Vázquez, Wentian Li, Ernesto Prado Montes de Oca:
Predicting functional regulatory SNPs in the human antimicrobial peptide genes DEFB1 and CAMP in tuberculosis and HIV/AIDS. 117-125 - Mariya A. Toropova, Aleksandar M. Veselinovic, Jovana B. Veselinovic, Dusica B. Stojanovic, Andrey A. Toropov:
QSAR modeling of the antimicrobial activity of peptides as a mathematical function of a sequence of amino acids. 126-130 - Ajay Kumar Mishra, Ganesh Selvaraj Duraisamy, Anna Týcová, Jaroslav Matousek:
Computational exploration of microRNAs from expressed sequence tags of Humulus lupulus, target predictions and expression analysis. 131-141 - Bruno Borguesan, Mariel Barbachan e Silva, Bruno Grisci, Mario Inostroza-Ponta, Márcio Dorn:
APL: An angle probability list to improve knowledge-based metaheuristics for the three-dimensional protein structure prediction. 142-157 - Karim El Soufi, Christian J. Michel:
Circular code motifs near the ribosome decoding center. 158-176 - Semanti Ghosh, Angshuman Bagchi:
Comparative analysis of the mechanisms of sulfur anion oxidation and reduction by dsr operon to maintain environmental sulfur balance. 177-184 - Hamed Yari, Mohamad Reza Ganjalikhany, Hamidreza Sadegh:
In silico investigation of new binding pocket for mitogen activated kinase kinase (MEK): Development of new promising inhibitors. 185-198 - Ainun Nizar Masbuchin, Mohammad Saifur Rohman, Jayarani Fatimah Putri, Miryanti Cahyaningtyas, Widodo:
279Val→Phe Polymorphism of lipoprotein-associated phospholipase A2 resulted in changes of folding kinetics and recognition to substrate. 199-207
Volume 59, Part B, December 2015
- Enrique Hernández-Lemus, Wentian Li, Pablo Meyer:
Advances in systems biology - New trends and perspectives. 1-2 - Faridah Hani Mohamed Salleh, Shereena Mohd Arif, Suhaila Zainudin, Mohd Firdaus Raih:
Reconstructing gene regulatory networks from knock-out data using Gaussian Noise Model and Pearson Correlation Coefficient. 3-14 - Haoming Xu, Mohammad Ali Moni, Pietro Liò:
Network regularised Cox regression and multiplex network models to predict disease comorbidities and survival of cancer. 15-31 - Hasin Afzal Ahmed, Dhruba K. Bhattacharyya, Jugal K. Kalita:
Core and peripheral connectivity based cluster analysis over PPI network. 32-41 - Guillermo de Anda-Jáuregui, Raúl A. Mejía-Pedroza, Jesús Espinal-Enríquez, Enrique Hernández-Lemus:
Crosstalk events in the estrogen signaling pathway may affect tamoxifen efficacy in breast cancer molecular subtypes. 42-54 - Md. Zubbair Malik, Shahnawaz Ali, Md. Jahoor Alam, Romana Ishrat, R. K. Brojen Singh:
Dynamics of p53 and Wnt cross talk. 55-66 - Hugo Tovar, Rodrigo García-Herrera, Jesús Espinal-Enríquez, Enrique Hernández-Lemus:
Transcriptional master regulator analysis in breast cancer genetic networks. 67-77 - Wentian Li, Jesús Espinal-Enríquez, Kim R. Simpfendorfer, Enrique Hernández-Lemus:
A survey of disease connections for CD4+ T cell master genes and their directly linked genes. 78-90 - Denis Kazakiewicz, Jonathan R. Karr, Karol M. Langner, Dariusz Plewczynski:
A combined systems and structural modeling approach repositions antibiotics for Mycoplasma genitalium. 91-97 - Brandon E. Barker, Narayanan Sadagopan, Yiping Wang, Kieran Smallbone, Christopher R. Myers, Hongwei Xi, Jason W. Locasale, Zhenglong Gu:
A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data. 98-112 - Stacey M. Gifford, Pablo Meyer:
Enzyme function is regulated by its localization. 113-122 - Andrew D. Rouillard, Zichen Wang, Avi Ma'ayan:
Reprint of "Abstraction for data integration: Fusing mammalian molecular, cellular and phenotype big datasets for better knowledge extraction". 123-138 - Wentian Li, Jan Freudenberg, Michaela Oswald:
Principles for the organization of gene-sets. 139-149
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