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ORCIDBioData Mining, Volume 18
Volume 18, Number 1, 2025
- Richa Gupta, Mansi Bhandari, Anhad Grover, Taher Al-Shehari
, Mohammed Kadrie, Taha Alfakih, Hussain Alsalman:
Correction: Predictive modeling of ALS progression: an XGBoost approach using clinical features. - Getnet Bogale Begashaw, Temesgen Zewotir, Haile Mekonnen Fenta:
A deep learning approach for classifying and predicting children's nutritional status in Ethiopia using LSTM-FC neural networks. - Xingyu Li, Lu Peng, Yu-Ping Wang, Weihua Zhang:
Open challenges and opportunities in federated foundation models towards biomedical healthcare. - Davide Chicco, Alessandro Fabris, Giuseppe Jurman:
The Venus score for the assessment of the quality and trustworthiness of biomedical datasets. - Lekai Xu, Tianjun Lan, Yiqian Huang, Liansheng Wang, Junqi Lin, Xinpeng Song, Hui Tang, Haotian Cao, Hua Chai:
A generative deep neural network for pan-digestive tract cancer survival analysis. - Salman Khan, Sumaiya Noor, Tahir Javed, Afshan Naseem, Fahad Aslam, Salman A. AlQahtani, Nijad Ahmad:
XGBoost-enhanced ensemble model using discriminative hybrid features for the prediction of sumoylation sites. - Patrick Schwehn, Pascal Falter-Braun:
Inferring protein from transcript abundances using convolutional neural networks. - Tayo Obafemi-Ajayi, Steven F. Jennings, Yu Zhang, Kara Li Liu, Joan Peckham, Jason H. Moore:
AI as an accelerator for defining new problems that transcends boundaries. - Subrata Das, Vatsal Patel, Shouvik Chakravarty, Arnab Ghosh, Anirban Mukhopadhyay, Nidhan K. Biswas:
An ensemble machine learning-based performance evaluation identifies top In-Silico pathogenicity prediction methods that best classify driver mutations in cancer. - Heesang Moon, Mina Rho:
MultiChem: predicting chemical properties using multi-view graph attention network. - Lane Fitzsimmons, Maria T. Acosta, David R. Adams, Ben Afzali, Ali Al-Beshri, Eric Allenspach, Aimee Allworth, Raquel L. Alvarez, Justin Alvey, Ashley Andrews, Euan A. Ashley, Carlos A. Bacino, Guney Bademci, Ashok Balasubramanyam, Dustin Baldridge, Erin Baldwin, Jim Bale, Michael Bamshad, Deborah Barbouth, Pinar Bayrak-Toydemir, Anita Beck, Alan H. Beggs, Edward Behrens, Gill Bejerano, Hugo J. Bellen, Jimmy Bennett, Jonathan A. Bernstein, Gerard T. Berry, Anna Bican, Stephanie Bivona, Elizabeth Blue, John Bohnsack, Devon Bonner, Nicholas Borja, Lorenzo Botto, Lauren C. Briere, Elizabeth A. Burke, Lindsay C. Burrage, Manish J. Butte, Peter Byers, William E. Byrd, Kaitlin Callaway, John Carey, George Carvalho, Thomas Cassini, Sirisak Chanprasert, Hsiao-Tuan Chao, Ivan Chinn, Gary D. Clark, Terra R. Coakley, Laurel A. Cobban, Joy D. Cogan, Matthew Coggins, F. Sessions Cole, Brian Corner, Rosario I. Corona, William J. Craigen, Andrew B. Crouse, Vishnu Cuddapah, Precilla D'souza, Hongzheng Dai, Kahlen Darr, Surendra Dasari, Joie Davis, Margaret Delgado, Esteban C. Dell'angelica, Katrina Dipple, Daniel Doherty, Naghmeh Dorrani, Jessica Douglas, Emilie D. Douine, Dawn Earl, Lisa T. Emrick, Christine M. Eng, Cecilia Esteves, Kimberly Ezell, Elizabeth L. Fieg, Paul G. Fisher, Brent L. Fogel, Jiayu Fu, William A. Gahl, Rebecca Ganetzky, Emily Glanton, Ian Glass, Page C. Goddard, Joanna M. Gonzalez, Andrea Gropman, Meghan Halley, Rizwan Hamid, Neal Hanchard, Kelly Hassey, Nichole Hayes, Frances High, Anne Hing, Fuki M. Hisama, Ingrid A. Holm, Jason Hom, Martha Horike-Pyne, Alden Huang, Yan Huang, Anna Hurst, Wendy Introne, Gail P. Jarvik, Suman Jayadev, Jean-Marie Orpa, Vaidehi Jobanputra, Oguz Kanca, Yigit Karasozen, Shamika Ketkar, Dana Kiley, Gonench Kilich, Eric W. Klee, Shilpa N. Kobren, Isaac S. Kohane, Jennefer N. Kohler, Bruce Korf, Susan Korrick, Deborah Krakow, Elijah Kravets, Seema R. Lalani, Christina Lam, Brendan C. Lanpher, Ian R. Lanza, Kumarie Latchman, Kimberly Leblanc, Brendan H. Lee, Kathleen A. Leppig, Richard A. Lewis, Pengfei Liu, Nicola Longo, Joseph Loscalzo, Richard L. Maas, Ellen F. Macnamara, Calum A. MacRae, Valerie V. Maduro, Audreystephannie Maghiro, Rachel Mahoney, May Christine V. Malicdan, Rong Mao, Ronit Marom, Gabor Marth, Beth A. Martin, Martín G. Martín, Julian A. Martínez-Agosto, Shruti Marwaha, Allyn McConkie-Rosell, Ashley McMinn, Matthew Might, Mohamad Mikati, Danny Miller, Ghayda Mirzaa, Breanna Mitchell, Paolo Moretti, Marie Morimoto, John J. Mulvihill, Lindsay Mulvihill, Mariko Nakano-Okuno, Stanley F. Nelson, Serena Neumann, Dargie Nitsuh, Donna Novacic, Devin Oglesbee, James P. Orengo, Laura Pace, Stephen Pak, J. Carl Pallais, Neil H. Parker, Léshon Peart, Leoyklang Petcharet, John A. Phillips, Filippo Pinto e Vairo, Jennifer E. Posey, Lorraine Potocki, Barbara N. Pusey Swerdzewski, Aaron R. Quinlan, Daniel J. Rader, Ramakrishnan Rajagopalan, Deepak A. Rao, Anna Raper, Wendy Raskind, Adriana Rebelo, Chloe M. Reuter, Lynette Rives, Lance H. Rodan, Martín Rodríguez, Jill A. Rosenfeld, Elizabeth Rosenthal, Francis Rossignol, Maura Ruzhnikov, Marla Sabaii, Jacinda B. Sampson, Timothy Schedl, Lisa Schimmenti, Kelly Schoch, Daryl A. Scott, Elaine Seto, Vandana Shashi, Emily Shelkowitz, Sam Sheppeard, Jimann Shin, Edwin K. Silverman, Giorgio Sirugo, Kathy Sisco, Tammi Skelton, Cara Skraban, Carson A. Smith, Kevin S. Smith, Lilianna Solnica-Krezel, Ben Solomon, Rebecca C. Spillmann, Andrew Stergachis, Joan M. Stoler, Kathleen Sullivan, Shamil R. Sunyaev, Shirley Sutton, David A. Sweetser, Virginia Sybert, Holly K. Tabor, Queenie Tan, Arjun Tarakad, Herman Taylor, Mustafa Tekin, Willa Thorson, Cynthia J. Tifft, Camilo Toro, Alyssa A. Tran, Rachel A. Ungar, Adeline Vanderver, Matt Velinder, Dave Viskochil, Tiphanie P. Vogel, Colleen E. Wahl, Melissa Walker, Nicole M. Walley, Jennifer Wambach, Michael F. Wangler, Patricia A. Ward, Daniel Wegner, Monika Weisz Hubshman, Mark Wener, Tara Wenger, Monte Westerfield, Matthew T. Wheeler, Jordan H. Whitlock, Lynne A. Wolfe, Heidi Wood, Kim Worley, Shinya Yamamoto, Zhe Zhang, Stephan Züchner, Brett K. Beaulieu-Jones, Shilpa Nadimpalli Kobren:
Enriched phenotypes in rare variant carriers suggest pathogenic mechanisms in rare disease patients. - Yi-Chou Chen, Hui-Chen Su, Shih-Ming Huang, Ching-Hsiao Yu, Jen-Huei Chang, Yi-Lin Chiu:
Immune cell profiles and predictive modeling in osteoporotic vertebral fractures using XGBoost machine learning algorithms. - Hyunwook Koh, Jihun Kim, Hyojung Jang:
MiCML: a causal machine learning cloud platform for the analysis of treatment effects using microbiome profiles. - Maryam Ramezani, Mohammadreza Mobinizadeh, Ahad Bakhtiari, Hamid R. Rabiee, Maryam Ramezani, Hakimeh Mostafavi, Alireza Olyaeemanesh, Ali Akbar Fazaeli, Alireza Atashi, Saharnaz Sazgarnejad, Efat Mohamadi, Amirhossein Takian:
Agenda setting for health equity assessment through the lenses of social determinants of health using machine learning approach: a framework and preliminary pilot study. - Peter T. Nguyen, Simon G. Coetzee, Irina Silacheva, Dennis J. Hazelett:
Genome-wide association studies are enriched for interacting genes. - Lanfang Zhang, Yuan Cai, Lin Li, Jie Hu, Changsha Jia, Xu Kuang, Yi Zhou, Zhiai Lan, Chunyan Liu, Feng Jiang, Nana Sun, Ni Zeng:
Analysis of global trends and hotspots of skin microbiome in acne: a bibliometric perspective. - Christel Sirocchi, Martin Urschler, Bastian Pfeifer:
Feature graphs for interpretable unsupervised tree ensembles: centrality, interaction, and application in disease subtyping. - Arezoo Abasi, Ahmad Nazari, Azar Moezy, Seyed Ali Fatemi Aghda:
Machine learning models for reinjury risk prediction using cardiopulmonary exercise testing (CPET) data: optimizing athlete recovery. - Ya-Ting Liang, Charlotte Wang:
Motif clustering and digital biomarker extraction for free-living physical activity analysis. - Onur Erdogan, Cem Iyigun, Yesim Aydin Son:
EnSCAN: ENsemble Scoring for prioritizing CAusative variaNts across multiplatform GWASs for late-onset alzheimer's disease. - Amr Eledkawy, Taher Hamza, Sara El-Metwally:
Towards precision oncology: a multi-level cancer classification system integrating liquid biopsy and machine learning. - Belén Serrano-Antón, Manuel Insúa Villa, Santiago Pendón-Minguillón, Santiago Paramés-Estévez, Alberto Otero-Cacho, Diego López-Otero, Brais Díaz-Fernández, María Bastos-Fernández, José Ramón González-Juanatey, Alberto P. Muñuzuri:
Unsupervised clustering based coronary artery segmentation. - Patrizia Ribino, Claudia Di Napoli, Giovanni Paragliola, Davide Chicco, Francesca Gasparini:
Multivariate longitudinal clustering reveals neuropsychological factors as dementia predictors in an Alzheimer's disease progression study. - Mina Jahangiri, Anoshirvan Kazemnejad, Keith S. Goldfeld, Maryam S. Daneshpour, Mehdi Momen, Shayan Mostafaei, Davood Khalili, Mahdi Akbarzadeh:
Leveraging mixed-effects regression trees for the analysis of high-dimensional longitudinal data to identify the low and high-risk subgroups: simulation study with application to genetic study. - Wei Jiang, Weicai Ye, Xiaoming Tan, Yun-Juan Bao:
Network-based multi-omics integrative analysis methods in drug discovery: a systematic review. - Di Zhao, Wenxuan Mu, Xiangxing Jia, Shuang Liu, Yonghe Chu, Jiana Meng, Hongfei Lin:
Few-shot biomedical NER empowered by LLMs-assisted data augmentation and multi-scale feature extraction. - Hanxiang Xu, Shizhuo Mu, Jingxuan Bao, Christos Davatzikos, Haochang Shou, Li Shen:
High-dimensional mediation analysis reveals the mediating role of physical activity patterns in genetic pathways leading to AD-like brain atrophy. - Yinyao Ma, Hanlin Lv, Yanhua Ma, Xiao Wang, Longting Lv, Xuxia Liang, Lei Wang:
Advancing preeclampsia prediction: a tailored machine learning pipeline integrating resampling and ensemble models for handling imbalanced medical data. - Ibrahim Burak Özyurt, Anita E. Bandrowski:
Automatic detection and extraction of key resources from tables in biomedical papers.
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