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ORCIDAlgorithms for Molecular Biology, Volume 20
Volume 20, Number 1, December 2025
- Timothé Rouzé, Igor Martayan, Camille Marchet, Antoine Limasset:
Fractional hitting sets for efficient multiset sketching. 1 - Chris Jennings-Shaffer, David H. Rich, Matthew Macaulay, Michael D. Karcher, Tanvi Ganapathy, Shosuke Kiami, Anna Kooperberg, Cheng Zhang, Marc A. Suchard, Frederick A. Matsen IV:
Finding high posterior density phylogenies by systematically extending a directed acyclic graph. 2 - Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead:
Mem-based pangenome indexing for k-mer queries. 3 - Ragnar Groot Koerkamp, Daniel Liu, Giulio Ermanno Pibiri:
The open-closed mod-minimizer algorithm. 4 - Karl Käther, Andreas Remmel, Steffen Lemke, Peter F. Stadler:
Unbiased anchors for reliable genome-wide synteny detection. 5 - Giovanni Buzzega, Alessio Conte, Roberto Grossi, Giulia Punzi:
sc McDag: indexing maximal common subsequences for k strings. 6 - Adam Cicherski, Anna Lisiecka, Norbert Dojer:
AlfaPang: alignment free algorithm for pangenome graph construction. 7 - Mahmudur Rahman Hera
, David Koslicki:
Estimating similarity and distance using FracMinHash. 8 - Leena Salmela:
Sama: a contig assembler with correctness guarantee. 9 - Leonard Bohnenkämper, Jens Stoye, Daniel Doerr:
Reconstructing rearrangement phylogenies of natural genomes. 10 - Larissa L. M. Aguiar, Felipe A. Louza:
Faster computation of left-bounded shortest unique substrings. 11
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