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XSEDE 2016: Miami, FL, USA
- Proceedings of the XSEDE16 Conference on Diversity, Big Data, and Science at Scale, Miami, USA, July 17-21, 2016. ACM 2016, ISBN 978-1-4503-4755-6
Accelerating Discovery in Scholarly Research
- Marcus Slavenas, Paul Rodríguez, Alan B. Craig, Elizabeth Wuerffel, Jeffrey Will:
Image Analysis and Infrastructure Support for Data Mining the Farm Security Administration: Office of War Information Photography Collection. 1:1-1:6 - Kiumars Soltani, Aiman Soliman, Anand Padmanabhan, Shaowen Wang:
UrbanFlow: Large-scale Framework to Integrate Social Media and Authoritative Landuse Maps. 2:1-2:8 - Ahmet Artu Yildirim
, David Tarboton
, Yan Liu, Nazmus Shams Sazib, Shaowen Wang:
Accelerating TauDEM for Extracting Hydrology Information from National-Scale High Resolution Topographic Dataset: Extended Abstract. 3:1-3:2 - Barry I. Schneider
, Klaus Bartschat, Xiaoxu Guan:
Time Propagation of Partial Differential Equations Using the Short Iterative Lanczos Method and Finite-Element Discrete Variable Representation: An Experiment Using the Intel Phi Coprocessors: Extended Abstract. 4:1-4:4 - Robert S. Sinkovits
, Michael G. Duda:
Optimization and parallel load balancing of the MPAS Atmosphere Weather and Climate Code. 5:1-5:6 - Junqi Yin
, Thomas Anthony, Jon Marstrander, Yuliang Liu, Chad Burdyshaw, Mitchel D. Horton, Lonnie D. Crosby
, R. Glenn Brook, Frank Skidmore:
Optimization of non-linear image registration in AFNI. 6:1-6:6 - Wendy K. Tam Cho
, Yan Y. Liu
:
A Parallel Evolutionary Algorithm for Subset Selection in Causal Inference Models. 7:1-7:8 - Don Liu, Yonglai Zheng, Arden Moore:
Three Dimensional Simulations of Fluid Flow and Heat Transfer with Spectral Element Method. 8:1-8:9 - Hui Liu, Peng Zhang, Kun Wang, Bo Yang, Zhangxin Chen
:
Performance and Scalability Analysis for Parallel Reservoir Simulations on Three Supercomputer Architectures. 9:1-9:8 - Eric Coulter, Jeremy Fischer
, Barbara Hallock, Richard Knepper
, Craig A. Stewart:
Implementation of Simple XSEDE-Like Clusters: Science Enabled and Lessons Learned. 10:1-10:8 - Kornelijus Survila, Ahmet Artu Yildirim
, Ting Li, Yan Y. Liu
, David G. Tarboton
, Shaowen Wang:
A Scalable High-performance Topographic Flow Direction Algorithm for Hydrological Information Analysis. 11:1-11:7 - Gerard Vanloo, Chung Ng, Kison Osborne, Kwai Wong, Ben Ramsey, Dali Wang, Zhirong Bao:
Using High Performance Computing to Model Cellular Embryogenesis. 12:1-12:4 - Tyler McDaniel, Eduardo F. D'Azevedo, Ying Wai Li, Paul R. C. Kent, Ming Wong, Kwai Wong:
Delayed Update Algorithms for Quantum Monte Carlo Simulation on GPU: Extended Abstract. 13:1-13:4 - David M. Rogers:
Efficient Primitives for Standard Tensor Linear Algebra. 14:1-14:7 - Daniel Jacob Tward, Anthony Kolasny, Chelsea S. Sicat, Timothy Brown, Michael I. Miller:
Tools for studying populations and timeseries of neuroanatomy enabled through GPU acceleration in the Computational Anatomy Gateway. 15:1-15:7 - Roberto Camacho Barranco
, Patricia J. Teller, Michael Gerndt:
Minimization of Xeon Phi Core Use with Negligible Execution Time Impact. 16:1-16:8 - Noushin Ghaffari, Jordi Abante
, Raminder Singh, Philip D. Blood, Charles D. Johnson
:
Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data. 17:1-17:4 - David L. Hart
, Melissa Rishel, Doug Nychka:
Estimating the Accuracy of User Surveys for Assessing the Impact of HPC Systems. 18:1-18:7 - Esthela Gallardo, Patricia J. Teller, Arturo Argueta, Jaime Jaloma:
Cross-Accelerator Performance Profiling. 19:1-19:8 - Scott McClary, Robert Henschel, Abhinav Thota, Holger Brunst, Benjamin Draper:
Improving the Scalability of a Charge Detection Mass Spectrometry Workflow. 20:1-20:8 - Tyson Lee Swetnam
, J. D. Pelletier, Craig Rasmussen
, N. R. Callahan, Nirav C. Merchant
, Eric Lyons, Mats Rynge
, Yan Liu
, Viswanath Nandigam
, Christopher J. Crosby
:
Scaling GIS analysis tasks from the desktop to the cloud utilizing contemporary distributed computing and data management approaches: A case study of project-based learning and cyberinfrastructure concepts. 21:1-21:6
Technology
- Craig A. Stewart
, David Y. Hancock, Matthew Vaughn
, Jeremy Fischer
, Tim Cockerill
, Liming Lee
, Nirav C. Merchant
, Therese Miller, John Michael Lowe, Daniel C. Stanzione Jr., James Taylor, Edwin Skidmore
:
Jetstream: performance, early experiences, and early results. 22:1-22:8 - Mahidhar Tatineni, Xiaoyi Lu, Dong Ju Choi, Amitava Majumdar
, Dhabaleswar K. Panda:
Experiences and Benefits of Running RDMA Hadoop and Spark on SDSC Comet. 23:1-23:5 - Rick Wagner
, Philip M. Papadopoulos, Dmitry Mishin, Trevor Cooper, Mahidhar Tatineni, Gregor von Laszewski
, Fugang Wang, Geoffrey C. Fox:
User Managed Virtual Clusters in Comet. 24:1-24:8 - Spencer Julian, Michael Shuey, Seth Cook:
Containers in Research: Initial Experiences with Lightweight Infrastructure. 25:1-25:6 - Tabitha K. Samuel, John Long, Gary L. Rogers
:
An Overview of the Implementation of CILogon at NICS. 26:1-26:5 - Kyle Chard, Steven Tuecke, Ian T. Foster:
Globus: Recent Enhancements and Future Plans. 27:1-27:8 - Chui-Hui Chiu, Nathan Lewis, Dipak Kumar Singh, Arghya Kusum Das, Mohammad M. Jalazai, Richard Platania, Sayan Goswami
, Kisung Lee, Seung-Jong Park
:
BIC-LSU: Big Data Research Integration with Cyberinfrastructure for LSU. 28:1-28:8 - Victor Hazlewood
, Kathy Benninger, Gregory D. Peterson, Jason Charcalla, Benny Sparks, Jesse Hanley
, Andrew K. Adams, Bryan Learn, Robert Budden, Derek Simmel, Joseph Lappa, Jared Yanovich:
Developing Applications with Networking Capabilities via End-to-End SDN (DANCES). 29:1-29:7 - Reuben D. Budiardja, Kapil Agrawal, Mark R. Fahey, Robert T. McLay, Doug James:
Library Function Tracking with XALT. 30:1-30:7 - Ruizhu Huang, Weijia Xu, Robert T. McLay:
A web interface for XALT log data analysis. 31:1-31:8 - Nikolay A. Simakov
, Robert L. DeLeon, Joseph P. White, Thomas R. Furlani
, Martins Innus, Steven M. Gallo, Matthew D. Jones, Abani K. Patra, Benjamin D. Plessinger, Jeanette M. Sperhac
, Thomas Yearke, Ryan Rathsam, Jeffrey T. Palmer
:
A Quantitative Analysis of Node Sharing on HPC Clusters Using XDMoD Application Kernels. 32:1-32:8
Software and Software Environments
- Smruti Padhy, Jay Alameda, Rob Kooper, Rui Liu, Sandeep Puthanveetil Satheesan
, Inna Zharnitsky, Gregory Jansen
, Michael C. Dietze
, Praveen Kumar
, Jong Lee
, Richard Marciano
, Luigi Marini, Barbara S. Minsker
, Chris Navarro, Marcus Slavenas, William C. Sullivan
, Kenton McHenry:
An Architecture for Automatic Deployment of Brown Dog Services at Scale into Diverse Computing Infrastructures. 33:1-33:8 - Cameron W. Smith, Brian Granzow
, Dan Ibanez, Onkar Sahni
, Kenneth E. Jansen
, Mark S. Shephard
:
In-memory Integration of Existing Software Components for Parallel Adaptive Unstructured Mesh Workflows. 34:1-34:6 - Arthur W. Wetzel, Jennifer Bakal, Markus Dittrich:
A Virtual File System for On-Demand Processing of Multidimensional Datasets. 35:1-35:5 - Francisco Castejón
, Antonio Gómez-Iglesias
, Antonio López-Fraguas:
Optimization of 3D Fusion Devices. 36:1-36:7 - Nuwan Goonasekera
, Andrew Lonie, James Taylor, Enis Afgan:
CloudBridge: a Simple Cross-Cloud Python Library. 37:1-37:8 - Drew Schmidt, Wei-Chen Chen, George Ostrouchov:
Introducing a New Client/Server Framework for Big Data Analytics with the R Language. 38:1-38:9 - Hao Hu, Xingchen Hong, Jeff Terstriep, Yan Y. Liu
, Michael P. Finn, Johnathan Rush
, Jeffrey Wendel, Shaowen Wang:
TopoLens: Building a CyberGIS Community Data Service for Enhancing the Usability of High-resolution National Topographic Datasets. 39:1-39:8 - Supun Nakandala, Sudhakar Pamidighantam
, Shameera Yodage, Nipurn Doshi, Eroma Abeysinghe, Chathuri Peli Kankanamalage, Suresh Marru, Marlon E. Pierce
:
Anatomy of the SEAGrid Science Gateway. 40:1-40:8 - Christopher S. Thompson, Steven M. Clark, Carol X. Song
:
The XSEDE BLAST Gateway: Leveraging Campus Development for the XSEDE Community. 41:1-41:8 - Rohan Garg, Jiajun Cao, Kapil Arya
, Gene Cooperman, Jérôme Vienne:
Extended Batch Sessions and Three-Phase Debugging: Using DMTCP to Enhance the Batch Environment. 42:1-42:8 - David E. Hudak, Douglas Johnson, Jeremy W. Nicklas, Eric Franz, Brian McMichael, Basil Gohar:
Open OnDemand: Transforming Computational Science Through Omnidisciplinary Software Cyberinfrastructure. 43:1-43:7 - Nawrin Sultana, Alexander Calvert, Jeffrey L. Overbey, Galen Wesley Arnold:
From OpenACC to OpenMP 4: Toward Automatic Translation. 44:1-44:8 - Amitava Majumdar
, Subhashini Sivagnanam, Kenneth Yoshimoto
, Ted Carnevale:
Understanding the Evolving Cyberinfrastructure Needs of the Neuroscience Community. 45:1-45:7 - Mark A. Miller
, Terri Schwartz, Wayne Pfeiffer:
User behavior and usage patterns for a highly accessed science gateway. 46:1-46:8 - Walter Scarborough, Carrie Arnold, Maytal Dahan
:
Case Study: Microservice Evolution and Software Lifecycle of the XSEDE User Portal API. 47:1-47:5 - Amit Chourasia, Mona Wong-Barnum, Dmitry Mishin, David R. Nadeau, Michael L. Norman:
SeedMe: A scientific data sharing and collaboration platform. 48:1-48:6 - Antonio Gómez-Iglesias
, Carlos Rosales, Todd Evans:
Practical Monitoring of Resource Utilization for HPC Applications. 49:1-49:8 - Kerk F. Kee, Mona Sleiman, Michelle Williams, Dominique Stewart:
The 10 Attributes that Drive Adoption and Diffusion of Computational Tools in E-Science. 50:1-50:8
Workforce Development and Diversity
- Ritu Arora, Sukrit Sondhi:
An Agile Approach for Engaging Students in Research and Development. 51:1-51:4 - Ricardo González-Méndez, Jimmy Torres, Pallavi Ishwad, Hugh B. Nicholas Jr., Alexander Ropelewski:
Assisting Bioinformatics Programs at Minority Institutions: Needs Assessment, and Lessons Learned - A Look at an Internship Program. 52:1-52:8 - Kwai Wong, Gregory D. Peterson:
Challenges and Accomplishments of the Computational Science Undergraduate Research Experiences Program. 53:1-53:5 - Semir Sarajlic, Neranjan Edirisinghe, Yuriy Lukinov, Michael Walters, Brock Davis, Gregori Faroux:
Orion: Discovery Environment for HPC Research and Bridging XSEDE Resources. 54:1-54:5 - Linda Akli, Jay Alameda
, Steven I. Gordon
, Marcela Madrid, Lorna I. Rivera:
XSEDE Training: Achieving Access and Inclusion. 55:1-55:6 - Ruby Mendenhall, Nicole M. Brown
, Michael L. Black, Mark Van Moer
, Ismini Lourentzou, Karen Flynn, Malaika Mckee, Assata Zerai
:
Rescuing Lost History: Using Big Data to Recover Black Women's Lived Experiences. 56:1-56:6 - Henry Neeman, Aaron Bergstrom, Dana Brunson
, Carrie L. Ganote, Zane Gray, Brian Guilfoos, Robert Kalescky, Evan Lemley, Brian G. Moore, Sai Kumar Ramadugu, Alana Romanella, Johnathan Rush
, Andrew H. Sherman, Brian Stengel
, Dan Voss:
The Advanced Cyberinfrastructure Research and Education Facilitators Virtual Residency: Toward a National Cyberinfrastructure Workforce. 57:1-57:8
Visualization Showcase
- Amit Chourasia, Maggie Avery, Ashley Willis, Sam Greenwood, Christopher J. Davies, Catherine Constable, David Gubbins:
Visualization of Geodynamo Simulations. 58:1-58:3 - Anne M. Brown, Nicholas F. Polys
, David R. Bevan
, Ayat Mohammed
:
Insights into Alzheimer's Disease: Molecular Dynamics (MD) Simulations of Peptide-Membrane Interactions. 59:1-59:3

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