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ORCIDBibTeX records: Edward C. Uberbacher
@article{DBLP:journals/ploscb/PaughCBLGFWRNLL16,
author = {Steven W. Paugh and
David R. Coss and
Ju Bao and
Lucas T. Laudermilk and
Christy R. Grace and
Antonio M. Ferreira and
M. Brett Waddell and
Granger Ridout and
Deanna Naeve and
Michael R. Leuze and
Philip F. LoCascio and
John C. Panetta and
Mark R. Wilkinson and
Ching{-}Hon Pui and
Clayton W. Naeve and
Edward C. Uberbacher and
Erik J. Bonten and
William E. Evans},
title = {MicroRNAs Form Triplexes with Double Stranded {DNA} at Sequence-Specific
Binding Sites; a Eukaryotic Mechanism via which microRNAs Could Directly
Alter Gene Expression},
journal = {PLoS Comput. Biol.},
volume = {12},
number = {2},
year = {2016},
url = {https://doi.org/10.1371/journal.pcbi.1004744},
doi = {10.1371/JOURNAL.PCBI.1004744},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/PaughCBLGFWRNLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SyedKPLPHBMGU12,
author = {Mustafa H. Syed and
Tatiana V. Karpinets and
Morey Parang and
Michael R. Leuze and
Byung{-}Hoon Park and
Doug Hyatt and
Steven D. Brown and
Steve Moulton and
Michael D. Galloway and
Edward C. Uberbacher},
title = {{BESC} knowledgebase public portal},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {750--751},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts016},
doi = {10.1093/BIOINFORMATICS/BTS016},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SyedKPLPHBMGU12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HyattLHU12,
author = {Doug Hyatt and
Philip F. LoCascio and
Loren J. Hauser and
Edward C. Uberbacher},
title = {Gene and translation initiation site prediction in metagenomic sequences},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2223--2230},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts429},
doi = {10.1093/BIOINFORMATICS/BTS429},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HyattLHU12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KarpinetsRSKSLSPSU10,
author = {Tatiana V. Karpinets and
Margaret F. Romine and
Denise Schmoyer and
Guruprasad Kora and
Mustafa H. Syed and
Michael R. Leuze and
Margrethe H. Serres and
Byung{-}Hoon Park and
Nagiza F. Samatova and
Edward C. Uberbacher},
title = {\emph{Shewanella} knowledgebase: integration of the experimental data
and computational predictions suggests a biological role for transcription
of intergenic regions},
journal = {Database J. Biol. Databases Curation},
volume = {2010},
year = {2010},
url = {https://doi.org/10.1093/database/baq012},
doi = {10.1093/DATABASE/BAQ012},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/KarpinetsRSKSLSPSU10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NarasimhanLU03,
author = {Chandrasegaran Narasimhan and
Philip F. LoCascio and
Edward C. Uberbacher},
title = {Background rareness-based iterative multiple sequence alignment algorithm
for regulatory element detection},
journal = {Bioinform.},
volume = {19},
number = {15},
pages = {1952--1963},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg266},
doi = {10.1093/BIOINFORMATICS/BTG266},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NarasimhanLU03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/FrazierTPJOU03,
author = {Marvin Frazier and
David Thomassen and
Aristides Patrinos and
Gary Johnson and
Carl Edward Oliver and
Edward C. Uberbacher},
title = {Stepping Up the Pace of Discovery: the Genomes to Life Program},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {2--9},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227287},
doi = {10.1109/CSB.2003.1227287},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/FrazierTPJOU03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/UberbacherTPJOF03,
author = {Edward C. Uberbacher and
David Thomassen and
Aristides Patrinos and
Gary Johnson and
Carl Edward Oliver and
Marvin Frazier},
title = {Computing for the {DOE} Genomes to Life Program},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {32},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227298},
doi = {10.1109/CSB.2003.1227298},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/UberbacherTPJOF03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/RazumovskayaOXUVX03,
author = {Jane Razumovskaya and
Victor Olman and
Dong Xu and
Edward C. Uberbacher and
Nathan Verberkmoes and
Ying Xu},
title = {A Computational Method for Assessing Peptide-Identification Reliability
in Tandem Mass Spectrometry Analysis with {SEQUEST}},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {421--423},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227353},
doi = {10.1109/CSB.2003.1227353},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/RazumovskayaOXUVX03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuUXU00,
author = {Dong Xu and
Michael A. Unseren and
Ying Xu and
Edward C. Uberbacher},
title = {Sequence-structure specificity of a knowledge based energy function
at the secondary structure level},
journal = {Bioinform.},
volume = {16},
number = {3},
pages = {269--285},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.3.257},
doi = {10.1093/BIOINFORMATICS/16.3.257},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuUXU00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/XuXU98,
author = {Ying Xu and
Dong Xu and
Edward C. Uberbacher},
title = {An Efficient Computational Method for Globally Optimal Threading},
journal = {J. Comput. Biol.},
volume = {5},
number = {3},
pages = {597--614},
year = {1998},
url = {https://doi.org/10.1089/cmb.1998.5.597},
doi = {10.1089/CMB.1998.5.597},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/XuXU98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/prl/XuOU98,
author = {Ying Xu and
Victor Olman and
Edward C. Uberbacher},
title = {A segmentation algorithm for noisy images: Design and evaluation},
journal = {Pattern Recognit. Lett.},
volume = {19},
number = {13},
pages = {1213--1224},
year = {1998},
url = {https://doi.org/10.1016/S0167-8655(98)00102-0},
doi = {10.1016/S0167-8655(98)00102-0},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/prl/XuOU98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/XuXU98,
author = {Ying Xu and
Dong Xu and
Edward C. Uberbacher},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A new method for modeling and solving the protein fold recognition
problem (extended abstract)},
booktitle = {Proceedings of the Second Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1998, New York, NY, USA,
March 22-25, 1998},
pages = {285--292},
publisher = {{ACM}},
year = {1998},
url = {https://doi.org/10.1145/279069.279134},
doi = {10.1145/279069.279134},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/XuXU98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ivc/XuU97,
author = {Ying Xu and
Edward C. Uberbacher},
title = {2D image segmentation using minimum spanning trees},
journal = {Image Vis. Comput.},
volume = {15},
number = {1},
pages = {47--57},
year = {1997},
url = {https://doi.org/10.1016/S0262-8856(96)01105-5},
doi = {10.1016/S0262-8856(96)01105-5},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ivc/XuU97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/XuU97,
author = {Ying Xu and
Edward C. Uberbacher},
title = {Automated Gene Identification in Large-Scale Genomic Sequences},
journal = {J. Comput. Biol.},
volume = {4},
number = {3},
pages = {325--338},
year = {1997},
url = {https://doi.org/10.1089/cmb.1997.4.325},
doi = {10.1089/CMB.1997.4.325},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/XuU97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/XuMU97,
author = {Ying Xu and
Richard J. Mural and
Edward C. Uberbacher},
editor = {Terry Gaasterland and
Peter D. Karp and
Kevin Karplus and
Christos A. Ouzounis and
Chris Sander and
Alfonso Valencia},
title = {Inferring Gene Structures in Genomic Sequences Using Pattern Recognition
and Expressed Sequence Tags},
booktitle = {Proceedings of the 5th International Conference on Intelligent Systems
for Molecular Biology, Halkidiki, Greece, June 21-26, 1997},
pages = {344--353},
publisher = {{AAAI}},
year = {1997},
url = {http://www.aaai.org/Library/ISMB/1997/ismb97-053.php},
timestamp = {Sun, 05 Nov 2017 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/XuMU97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/XuU97,
author = {Ying Xu and
Edward C. Uberbacher},
editor = {Michael S. Waterman},
title = {Reference-based gene model prediction on {DNA} contigs (extended abstract)},
booktitle = {Proceedings of the First Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1997, Santa Fe, NM, USA,
January 20-23, 1997},
pages = {330--336},
publisher = {{ACM}},
year = {1997},
url = {https://doi.org/10.1145/267521.267892},
doi = {10.1145/267521.267892},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/XuU97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuanU96,
author = {Xiaojun Guan and
Edward C. Uberbacher},
title = {Alignments of {DNA} and protein sequences containing frameshift errors},
journal = {Comput. Appl. Biosci.},
volume = {12},
number = {1},
pages = {31--40},
year = {1996},
url = {https://doi.org/10.1093/bioinformatics/12.1.31},
doi = {10.1093/BIOINFORMATICS/12.1.31},
timestamp = {Fri, 15 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuanU96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuU96,
author = {Ying Xu and
Edward C. Uberbacher},
title = {A polynomial-time algorithm for a class of protein threading problems},
journal = {Comput. Appl. Biosci.},
volume = {12},
number = {6},
pages = {511--517},
year = {1996},
url = {https://doi.org/10.1093/bioinformatics/12.6.511},
doi = {10.1093/BIOINFORMATICS/12.6.511},
timestamp = {Fri, 15 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuU96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/MatisXSGEMU96,
author = {Sherri Matis and
Ying Xu and
Manesh J. Shah and
Xiaojun Guan and
J. Ralph Einstein and
Richard J. Mural and
Edward C. Uberbacher},
title = {Detection of {RNA} Polymerase {II} Promoters and Polyadenylation Sites
in Human {DNA} Sequence},
journal = {Comput. Chem.},
volume = {20},
number = {1},
pages = {135--140},
year = {1996},
url = {https://doi.org/10.1016/S0097-8485(96)80015-5},
doi = {10.1016/S0097-8485(96)80015-5},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/MatisXSGEMU96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/XuMU96,
author = {Ying Xu and
Richard J. Mural and
Edward C. Uberbacher},
title = {An Iterative Algorithm for Correcting Sequencing Errors in {DNA} Coding
Regions},
journal = {J. Comput. Biol.},
volume = {3},
number = {3},
pages = {333--344},
year = {1996},
url = {https://doi.org/10.1089/cmb.1996.3.333},
doi = {10.1089/CMB.1996.3.333},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/XuMU96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pieee/XuMESU96,
author = {Ying Xu and
Richard J. Mural and
J. Ralph Einstein and
Manesh B. Shah and
Edward C. Uberbacher},
title = {{GRAIL:} a multi-agent neural network system for gene identification},
journal = {Proc. {IEEE}},
volume = {84},
number = {10},
pages = {1544--1552},
year = {1996},
url = {https://doi.org/10.1109/5.537117},
doi = {10.1109/5.537117},
timestamp = {Tue, 05 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pieee/XuMESU96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/XuU96,
author = {Ying Xu and
Edward C. Uberbacher},
editor = {David J. States and
Pankaj Agarwal and
Terry Gaasterland and
Lawrence Hunter and
Randall Smith},
title = {Gene Prediction by Pattern Recognition and Homology Search},
booktitle = {Proceedings of the Fourth International Conference on Intelligent
Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996},
pages = {241--251},
publisher = {{AAAI}},
year = {1996},
url = {http://www.aaai.org/Library/ISMB/1996/ismb96-026.php},
timestamp = {Sun, 05 Nov 2017 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/XuU96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuMU95,
author = {Ying Xu and
Richard J. Mural and
Edward C. Uberbacher},
title = {Correcting sequencing errors in {DNA} coding regions using a dynamic
programming approach},
journal = {Comput. Appl. Biosci.},
volume = {11},
number = {2},
pages = {117--124},
year = {1995},
url = {https://doi.org/10.1093/bioinformatics/11.2.117},
doi = {10.1093/BIOINFORMATICS/11.2.117},
timestamp = {Fri, 15 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuMU95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/MatisDMMU95,
author = {Sherri Matis and
Howard Doyle and
Ignazio Marino and
Richard J. Mural and
Edward C. Uberbacher},
title = {Use of Neural Networks for Prediction of Graft Failure following Liver
Transplantation},
booktitle = {Eighth Annual {IEEE} Symposium on Computer-Based Medical Systems (CBMS'95),
June 9-10, 1995, Lubbock, Texas, {USA}},
pages = {133},
publisher = {{IEEE} Computer Society},
year = {1995},
url = {https://doi.org/10.1109/CBMS.1995.465437},
doi = {10.1109/CBMS.1995.465437},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cbms/MatisDMMU95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/GuanMU95,
author = {Xiaojun Guan and
Richard J. Mural and
Edward C. Uberbacher},
title = {Sequence comparison on a cluster of workstations using the {PVM} system},
booktitle = {Proceedings of {IPPS} '95, The 9th International Parallel Processing
Symposium, April 25-28, 1995, Santa Barbara, California, {USA}},
pages = {190--195},
publisher = {{IEEE} Computer Society},
year = {1995},
url = {https://doi.org/10.1109/IPPS.1995.395931},
doi = {10.1109/IPPS.1995.395931},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/GuanMU95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/CravenMHU95,
author = {Mark Craven and
Richard J. Mural and
Loren J. Hauser and
Edward C. Uberbacher},
editor = {Christopher J. Rawlings and
Dominic A. Clark and
Russ B. Altman and
Lawrence Hunter and
Thomas Lengauer and
Shoshana J. Wodak},
title = {Predicting Protein Folding Classes without Overly Relying on Homology},
booktitle = {Proceedings of the Third International Conference on Intelligent Systems
for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995},
pages = {98--106},
publisher = {{AAAI}},
year = {1995},
url = {http://www.aaai.org/Library/ISMB/1995/ismb95-012.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/CravenMHU95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuMU94,
author = {Ying Xu and
Richard J. Mural and
Edward C. Uberbacher},
title = {Constructing gene models from accurately predicted exons: an application
of dynamic programming},
journal = {Comput. Appl. Biosci.},
volume = {10},
number = {6},
pages = {613--623},
year = {1994},
url = {https://doi.org/10.1093/bioinformatics/10.6.613},
doi = {10.1093/BIOINFORMATICS/10.6.613},
timestamp = {Fri, 15 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuMU94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/XuEMSU94,
author = {Yin Xu and
J. Ralph Einstein and
Richard J. Mural and
Manesh J. Shah and
Edward C. Uberbacher},
editor = {Russ B. Altman and
Douglas L. Brutlag and
Peter D. Karp and
Richard H. Lathrop and
David B. Searls},
title = {An Improved System for Exon Recognition and Gene Modeling in Human
{DNA} Sequence},
booktitle = {Proceedings of the Second International Conference on Intelligent
Systems for Molecular Biology, August 14-17, 1994, Stanford University,
Stanford, California, {USA}},
pages = {376},
publisher = {{AAAI}},
year = {1994},
url = {http://www.aaai.org/Library/ISMB/1994/ismb94-047.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/XuEMSU94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppsc/GuanMMU91,
author = {Xiaojun Guan and
Richard J. Mural and
Reinhold Mann and
Edward C. Uberbacher},
editor = {Jack J. Dongarra and
Ken Kennedy and
Paul Messina and
Danny C. Sorensen and
Robert G. Voigt},
title = {On Parallel Search of {DNA} Sequence Databases},
booktitle = {Proceedings of the Fifth {SIAM} Conference on Parallel Processing
for Scientific Computing, Houston, Texas, USA, March 25-27, 1991},
pages = {332--337},
publisher = {{SIAM}},
year = {1991},
timestamp = {Mon, 21 Aug 2017 16:43:26 +0200},
biburl = {https://dblp.org/rec/conf/ppsc/GuanMMU91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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