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ORCIDNucleic Acids Research, Volume 14
Volume 14, Number 1, January 1986
- H. S. Bilofsky, Christian Burks, James W. Fickett, W. B. Goad, F. I. Lewitter, W. P. Rindone, C. D. Swindell, C. S. Tung:
The GenBank genetic sequence databank. 1-4 - G. H. Hamm, G. N. Cameron:
The EMBL data library. 5-9 - David G. George, Winona C. Barker, Lois T. Hunt:
The protein identification resource (PIR). 11-15 - Dennis H. Smith, Douglas L. Brutlag, Peter Friedland, Laurence H. Kedes:
BIONET: national computer resource for molecular biology. 17-20 - Temple F. Smith, K. D. Gruskin, S. Tolman, D. Faulkner:
The molecular biology computer research resource. 25-29 - Gad M. Landau, Uzi Vishkin, Ruth Nussinov
:
An efficient string matching algorithm with k differences for nucleotide and amino acid sequences. 31-46 - L. Burnett:
Development of a superior strategy for computer-assisted nucleotide sequence analysis. 47-55 - Osamu Gotoh, Y. Tagashira:
Sequence search on a supercomputer. 57-64 - M. B. Shapiro, P. Senapathy:
Automated preparation of DNA sequences for publication. 65-73 - Bruce A. Shapiro, Ruth Nussinov, Lewis E. Lipkin, Jacob V. Maizel:
A sequence analysis system encompassing rules for DNA helical distortion. 75-86 - Rose A. Grymes, Paul Travers, Alan Engelberg:
GEL - a computer tool for DNA sequencing projects. 87-98 - Hannu Peltola, Hans Söderlund, Esko Ukkonen:
Algorithms for the search of amino acid patterns in nucleic acid sequences. 99-107 - Martin E. Mulligan, William R. McClure:
Analysis of the occurrence of promoter-sites in DNA. 109-126 - Anna Tramontano, M. F. Macchiato:
Probability of coding of a DNA sequence: an algorithm to predict translated reading frames from their thermodynamic characteristics. 127-135 - Johan A. van den Berg, M. Osinga:
A peptide to DNA conversion program. 137-140 - B. Clift, David Haussler, Ross M. McConnell, Thomas D. Schneider, Gary D. Stormo:
Sequence landscapes. 141-158 - William Bains:
MULTAN: a program to align multiple DNA sequences. 159-177 - Jean-Michel Claverie, L. Bougueleret:
Heuristic informational analysis of sequences. 179-196 - C. Fondrat, Philippe Dessen, P. Le Beux:
Principle of codification for quick comparisons with the entire biomolecule databanks and associated programs in FORTRAN 77. 197-204 - Charles B. Lawrence:
Data structures for DNA sequence manipulation. 205-216 - Rodger Staden:
The current status and portability of our sequence handling software. 217-231 - A. H. Reisner, Carolyn A. Bucholtz:
The MTX package of computer programmes for the comparison of sequences of nucleotides and amino acid residues. 233-238 - Jonathan P. Arnold, Virginia K. Eckenrode, Klaus Lemke, Gregory J. Phillips, Stephen W. Schaeffer:
A comprehensive package for DNA sequence analysis in FORTRAN IV for the PDP-11. 239-254 - T. W. Stone, K. N. Potter:
Methylation blockage and other improvements to a comprehensive DNA analysis program. 255-264 - Carolyn A. Bucholtz, A. H. Reisner:
MBIS - an integrated system for the retrieval and analyses of sequence data from nucleic acids and proteins. 265-272 - R. Harr, P. Fallman, M. Haggstrom, L. Wahlstrom, P. Gustafsson:
GENEUS, a computer system for DNA and protein sequence analysis containing an information retrieval system for the EMBL data library. 273-284 - R. J. Douthart, J. J. Thomas, S. D. Rosier, J. E. Schmaltz, J. W. West:
Cloning simulation in the cage environment. 285-297 - A. L. Williams Jr., Ignacio Tinoco Jr.:
A dynamic programming algorithm for finding alternative RNA secondary structures. 299-315 - Kurt Stüber:
Nucleic acid secondary structure prediction and display. 317-326 - Michael Gribskov, Richard R. Burgess, J. Devereux:
PEPPLOT, a protein secondary structure analysis program for the UWGCG sequence analysis software package. 327-334 - Günther Zehetner, Hans Lehrach:
A computer program package for restriction map analysis and manipulation. 335-349 - P. S. Neumaier:
A program package applicable to the detection of overlaps between restriction maps. 351-362 - Eric M. Sobel, H. M. Martinez:
A multiple sequence alignment program. 363-374 - T. Atilgan, H. B. Nicholas Jr., W. H. McClain:
A statistical method for correlating tRNA sequence with amino acid specificity. 375-380 - C. S. Tung, Stephen C. Harvey:
Computer graphics program to reveal the dependence of the gross three- dimensional structure of the B-DNA double helix on primary structure. 381-387 - Kenji Yamamoto, Hiroshi Yoshikura:
Relation between genomic and capsid structures in RNA viruses. 389-396 - J. L. Modelevsky, F. Norris, G. L. Griesinger:
GENEVIEW and the DNACE data bus: computational tools for analysis, display and exchange of genetic information. 397-403 - C. M. Tolstoshev, H. W. Matthes, P. Oudet:
Computer management of oligonucleotide synthesis on cellulose filters. 405-415 - J. K. Elder, D. K. Green, E. M. Southern:
Automatic reading of DNA sequencing gel autoradiographs using a large format digital scanner. 417-424 - L. Burnett, A. Basten, W. J. Hensley:
Should nucleotide sequence analyzing computer algorithms always extend homologies by extending homologies? 425-430 - C. C. Marvel:
A program for the identification of tRNA-like structures in DNA sequence data. 431-435 - Philip Taylor:
A computer program for translating DNA sequences into protein. 437-441 - David W. Mount, Bruce Conrad:
Improved programs for DNA and protein sequence analysis on the IBM personal computer and other standard computer systems. 443-454 - B. Franz Lang, Gertraud Burger:
A collection of programs for nucleic acid and protein analysis, written in FORTRAN 77 for IBM-PC compatible microcomputers. 455-465 - E. H. Harley:
A general DNA analysis program for the Hewlett-Packard Model 86/87 microcomputer. 467-477 - J. Pustell, F. C. Kafatos:
A convenient and adaptable microcomputer environment for DNA and protein sequence manipulation and analysis. 479-488 - James C. Dabrowiak, A. Skorobogaty, N. Rich, C. P. Vary, J. N. Vournakis:
Computer assisted microdensitometric analysis of footprinting autoradiographic DATA. 489-499 - Eugene W. Myers, David W. Mount:
Computer program for the IBM personal computer which searches for approximate matches to short oligonucleotide sequences in long target DNA sequences. 501-508 - J. E. Cowin, C. H. Jellis, D. Rickwood:
A new method of representing DNA sequences which combines ease of visual analysis with machine readability. 509-515 - R. E. Johnston, J. M. Mackenzie Jr., W. G. Dougherty:
Assembly of overlapping DNA sequences by a program written in BASIC for 64K CP/M and MS-DOS IBM-compatible microcomputers. 517-527 - A. MacMurray:
DIGICALC: a restriction fragment analysis program. 529-536 - P. A. Blanz, S. Kleindienst:
A computer program for comparative analysis of nucleic acid sequences. 537-541 - G. Krishnan, R. K. Kaul, P. Jagadeeswaran:
DNA sequence analysis: a procedure to find homologies among many sequences. 543-550 - H. Marcaud, Jacques Gabarro-Arpa, Ricardo Ehrlich, Claude Reiss:
An algorithm for studying cooperative transitions in DNA. 551-558 - T. Adrian, W. Heinrich:
COMAP: a comigrating analysis program for estimating the relationship of adenoviruses on the genome level. 559-565 - R. M. Lewis:
PROBFIND: a computer program for selecting oligonucleotide probes from peptide sequences. 567-570 - José Campione-Piccardo, M. Ruben:
An integrated software system for microcomputer management of recombinant DNA data. 571-574 - C. E. Gariepy, M. I. Lomax, L. I. Grossman:
SPLINT: a cubic spline interpolation program for the analysis of fragment sizes in one-dimensional electrophoresis gels. 575-581 - C. Marck:
Fast analysis of DNA and protein sequence on Apple IIe: restriction sites search, alignment of short sequence and dot matrix analysis. 583-590 - R. H. Gross:
A DNA sequence analysis program for the Apple Macintosh. 591-596 - Brian Fristensky:
Improving the efficiency of dot-matrix similarity searches through use of an oligomer table. 597-610 - P. E. Doggett, Frederick R. Blattner:
Personal access to sequence databases on personal computers. 611-619
Volume 14, Number 13, July 1986
- Paul M. Sharp, T. M. Tuohy, K. R. Mosurski:
Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. 5125-5143 - R. Jemtland, E. Maehlum, Odd Stokke Gabrielsen, T. B. Oyen:
Regular distribution of length heterogeneities within non-transcribed spacer regions of cloned and genomic rDNA of Saccharomyces cerevisiae. 5145-5158 - D. King, Y. H. Sun, Jerry B. Lingrel:
Amino acid sequence of the testosterone-regulated mouse kidney RP2 protein deduced from its complementary DNA sequence. 5159-5170 - Frank Baas, G. J. van Ommen, H. Bikker, A. C. Arnberg, J. J. de Vijlder:
The human thyroglobulin gene is over 300 kb long and contains introns of up to 64 kb. 5171-5186 - P. Breining, W. Piepersberg:
Yeast omnipotent supressor SUP1 (SUP45): nucleotide sequence of the wildtype and a mutant gene. 5187-5197 - Christiaan Karreman, N. Tandeau de Marsac, A. de Waard:
Isolation of a deoxycytidylate methyl transferase capable of protecting DNA uniquely against cleavage by endonuclease R.Aqu I (isoschizomer of Ava I). 5199-5205 - Phouthone Keohavong, Renata Gattoni, Philippe Schmitt, James Stévenin:
The different intron 2 species excised in vivo from the E2A premRNA of adenovirus-2: an approach to analyse alternative splicing. 5207-5227 - R. E. Koes, C. E. Spelt, H. J. Reif, P. J. van den Elzen, E. Veltkamp, J. N. Mol:
Floral tissue of Petunia hybrida (V30) expresses only one member of the chalcone synthase multigene family. 5229-5239 - Halina Sierakowska, Wlodzimierz Szer, Paul J. Furdon, Ryszard Kole:
Antibodies to hnRNP core proteins inhibit in vitro splicing of human beta-globin pre-mRNA. 5241-5254 - A. C. Boyd, I. G. Charles, J. W. Keyte, W. J. Brammar:
Isolation and computer-aided characterization of MmeI, a type II restriction endonuclease from Methylophilus methylotrophus. 5255-5274 - Harry P. Erba, Peter Gunning, Larry Kedes:
Nucleotide sequence of the human gamma cytoskeletal actin mRNA: anomalous evolution of vertebrate non-muscle actin genes. 5275-5294 - F. S. Nallaseth, M. J. Dewey:
Moderately repeated mouse Y chromosomal sequence families present distinct types of organization and evolutionary change. 5295-5307 - Sukadev Lavu, E. Premkumar Reddy:
Structural organization and nucleotide sequence of mouse c-myb oncogene: activation in ABPL tumors is due to viral integration in an intron which results in the deletion of the 5' coding sequences. 5309-5320 - F. Quan, R. G. Korneluk, M. B. Tropak, R. A. Gravel:
Isolation and characterization of the human catalase gene. 5321-5335 - R. M. Gemmill, P. E. Schwartz, W. W. Doane:
Structural organization of the Amy locus in seven strains of Drosophila melanogaster. 5337-5352 - Nabeel A. Affara, L. Florentin, N. Morrison, Kenny Kwok, Michael Mitchell, A. Cook, Doreen Jamieson, L. Glasgow, L. Meredith, E. Boyd:
Regional assignment of Y-linked DNA probes by deletion mapping and their homology with X-chromosome and autosomal sequences. 5353-5373 - Nabeel A. Affara, M. A. Ferguson-Smith, J. Tolmie, Kenny Kwok, Michael Mitchell, Doreen Jamieson, A. Cooke, L. Florentin:
Variable transfer of Y-specific sequences in XX males. 5375-5387 - L. E. Xodo, G. Manzini, F. Quadrifoglio, Gijs A. van der Marel, Jacques H. van Boom:
Thermodynamic behaviour of the heptadecadeoxynucleotide d(CGCGCGTTTTTCGCGCG) forming B and Z hairpins in aqueous solution. 5389-5398 - Brian C. Froehler, Peter G. Ng, Mark D. Matteucci:
Synthesis of DNA via deoxynucleoside H-phosphonate intermediates. 5399-5407 - A. S. Jones, S. Niwas, H. Tanaka, R. T. Walker:
Synthesis of two diastereoisomeric p-nitrophenyl phosphodiesters of 2', 3'-secouridine and their affinity for phosphodiesterases. 5409-5416 - Leslie L. Domier, Kathleen M. Franklin, Muhammed Shahabuddin, Gary M. Hellmann, Jean H. Overmeyer, Shivanand T. Hiremath, Martin F. Siaw, George P. Lomonossoff, John G. Shaw, Robert E. Rhoads:
The nucleotide sequence of tobacco vein mottling virus RNA. 5417-5430 - Dawn E. Kelley, Robert P. Perry:
Transcriptional and posttranscriptional control of immunoglobulin mRNA production during B lymphocyte development. 5431-5447 - C. Grabau, J. E. Cronan Jr.:
Nucleotide sequence and deduced amino acid sequence of Escherichia coli pyruvate oxidase, a lipid-activated flavoprotein. 5449-5460 - Annankoil R. Srinivasan, Wilma K. Olson:
Conformational studies of (2'-5') polynucleotides: theoretical computations of energy, base morphology, helical structure, and duplex formation. 5461-5479 - A. C. Looman, J. Bodlaender, M. de Gruyter, A. Vogelaar, P. H. van Knippenberg:
Secondary structure as primary determinant of the efficiency of ribosomal binding sites in Escherichia coli. 5481-5497 - Michael Lassner, Jan Dvorak:
Preferential homogenization between adjacent and alternate subrepeats in wheat rDNA. 5499-5512 - M. Pentz, R. Vatev, D. A. Goldthwait:
The effect of preincubation of HeLa cell nuclei with ATP on the degradation of mononucleosomal DNA by micrococcal nuclease. 5513-5529 - Michael L. Muhich, Larry Simpson:
Specific cleavage of kinetoplast minicircle DNA from Leishmania tarentolae by mung bean nuclease and identification of several additional minicircle sequence classes. 5531-5556 - Hsin-Fang Yang-Yen, Lawrence I. Rothblum:
Partial nucleotide sequence of a 3.4 kb fragment from the rat ribosomal DNA nontranscribed spacer. 5557 - M. M. Binns, M. E. Boursnell, F. M. Tomley, T. D. Brown:
Nucleotide sequence encoding the membrane protein of the IBV strain 6/82. Nucleic Acids Res. 14(13): 5558 (1986) - Saho Ohno, Y. Emori, K. Suzuki:
Nucleotide sequence of a cDNA coding for the small subunit of human calcium-dependent protease. Nucleic Acids Res. 14(13): 5559 (1986) - A. Rashtchian, M. Shaffer:
The nucleotide sequences of two tRNA genes from Campylobacter jejuni. Nucleic Acids Res. 14(13): 5560 (1986) - George I. Bell, R. C. Najarian, G. T. Mullenbach, R. A. Hallewell:
cDNA sequence coding for human kidney catalase. Nucleic Acids Res. 14(13): 5561-5562 (1986) - Thomas J. Murphy, Martin Blumenfeld:
Nucleotide sequence of a Drosophila melanogaster H1 histone gene. 5563 - Craig S. Pikaard, G. A. Mignery, D. P. Ma, V. J. Stark, W. D. Park:
Sequence of two apparent pseudogenes of the major potato tuber protein, patatin. 5564-5566 - B. M. Ross, J. E. Looney, J. D. Harding:
Nucleotide sequence of a mouse tRNALeu gene. 5567 - Giovanni Paolella, Rita Santamaria, Pasqualina Buono, Francesco Salvatore:
Human aldolase B cDNA detects a Pvu II RFLP in healthy individuals. 5568 - A. D. Roses, Margaret A. Pericak-Vance, D. A. Ross, L. Yamaoka, R. J. Bartlett:
RFLPs at the D19S19 locus of human chromosome 19 linked to myotonic dystrophy (DM). 5569 - R. Goldstein, J. Gruhn, F. C. Arnett, M. Duvic:
A frequent polymorphism of the complement component C4 gene. 5570 - P. Oettgen, Stylianos E. Antonarakis, S. K. Karathanasis:
PvuII polymorphic site upstream to the human ApoCIII gene. 5571 - K. Wrogemann, B. Arveiler, I. Oberle, L. M. Mulligan, J. A. Holden, C. J. Forster-Gibson, B. N. White:
A TaqI RFLP in Xq26-Xqter detected by pX45h [HGM8 no. DXS100h]. 5572
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