Stop the war!Остановите войну!
for scientists:
default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDBioinformatics, Volume 17
Volume 17, Number 1, January 2001
- Chris Sander:
Bioinformatics - Challenges in 2001. 1-2
- Ekaterina M. Myasnikova, Anastassia Samsonova
, Konstantin Kozlov, Maria Samsonova, John Reinitz:
Registration of the expression patterns of Drosophila segmentation genes by two independent methods. 3-12 - Andrey A. Mironov, Pavel S. Novichkov, Mikhail S. Gelfand:
Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors. 13-15 - Prasith Baccam, Robert J. Thompson, Olivier Fedrigo, Susan Carpenter, James L. Cornette:
PAQ: Partition Analysis of Quasispecies. 16-22 - Gill Bejerano, Golan Yona:
Variations on probabilistic suffix trees: statistical modeling and prediction of protein families. 23-43 - Dmitrij Frishman, Kaj Albermann, Jean Hani, Klaus Heumann, Agnes Metanomski, Alfred Zollner, Hans-Werner Mewes:
Functional and structural genomics using PEDANT. 44-57 - Salvatore Lanzavecchia, Francesca Cantele, Pier Luigi Bellon:
Alignment of 3D structures of macromolecular assemblies. 58-62 - Liam J. McGuffin, Kevin Bryson, David T. Jones:
What are the baselines for protein fold recognition? 63-72 - Catherine Letondal:
A Web interface generator for molecular biology programs in Unix. 73-82 - Adam C. Siepel, Andrew D. Farmer, Andrew N. Tolopko, Mingzhe Zhuang, Pedro Mendes, William D. Beavis, Bruno W. S. Sobral:
ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources. 83-94
- Richard M. R. Coulson, Anton J. Enright, Christos A. Ouzounis:
Transcription-associated protein families are primarily taxon-specific. 95-97
- Günter Raddatz, Michaela Dehio, Thomas F. Meyer, Christoph Dehio:
PrimeArray: genome-scale primer design for DNA-microarray construction. 98-99 - William C. Ray, Charles J. Daniels:
The PACRAT system: an extensible WWW-based system for correlated sequence retrieval, storage and analysis. 100-104 - J. N. Selley, J. Swift, Terri K. Attwood:
EASY-an Expert Analysis SYstem for interpreting database search outputs. 105-106 - Christoph Helma, Ross D. King, Stefan Kramer, Ashwin Srinivasan:
The Predictive Toxicology Challenge 2000-2001. 107-108
Volume 17, Numer 2, February
- Alvis Brazma:
On the Importance of Standardisation in Life Sciences. 113-114
- Frédéric Achard, Guy Vaysseix, Emmanuel Barillot:
XML, bioinformatics and data integration. 115-125
- Javier Herrero, Alfonso Valencia, Joaquín Dopazo:
A hierarchical unsupervised growing neural network for clustering gene expression patterns. 126-136 - Bruce A. Shapiro, Jin Chu Wu, David Bengali, Mark J. Potts:
The massively parallel genetic algorithm for RNA folding: MIMD implementation and population variation. 137-148 - Ming Li, Jonathan H. Badger, Xin Chen, Sam Kwong, Paul E. Kearney, Haoyong Zhang:
An information-based sequence distance and its application to whole mitochondrial genome phylogeny. 149-154 - Toshihide Ono, Haretsugu Hishigaki, Akira Tanigami, Toshihisa Takagi:
Automated extraction of information on protein-protein interactions from the biological literature. 155-161 - Raja Mazumder, Ashok S. Kolaskar, Donald Seto:
GeneOrder: comparing the order of genes in small genomes. 162-166 - Hideaki Mizuno, Yoshimasa Tanaka, Kenta Nakai, Akinori Sarai:
ORI-GENE: gene classification based on the evolutionary tree. 167-173 - Frédéric Tores, Emmanuel Barillot:
The art of pedigree drawing: algorithmic aspects. 174-179 - Robert Stevens, Carole A. Goble, Patricia G. Baker, Andy Brass:
A classification of tasks in bioinformatics. 180-188
- Hiromi Nishida:
Distribution of genes for lysine biosynthesis through the aminoadipate pathway among prokaryotic genomes. 189-191
- Matej Lexa, J. Horak, Bretislav Brzobohaty:
Virtual PCR. 192-193 - Kevin P. Micallef, Mark Cooper, Dean W. Podlich:
Using clusters of computers for large QU-GENE simulation experiments. 194-195 - Cécile André, Pierre Vincens, Jean-François Boisvieux, Serge A. Hazout:
MOSAIC: segmenting multiple aligned DNA sequences. 196-197 - P. M. Stothard:
COMBOSA3D: combining sequence alignments with three-dimensional structures. 198-199 - Asim S. Siddiqui, Uwe Dengler, Geoffrey J. Barton:
3Dee: a database of protein structural domains. 200-201 - Piero Fariselli, Rita Casadio:
RCNPRED: prediction of the residue co-ordination numbers in proteins. 202-204
Volume 17, Number 3, March 2001
- David Hall, Suchendra M. Bhandarkar, Jonathan P. Arnold, Tongzhang Jiang:
Physical mapping with automatic capture of hybridization data. 205-213 - Thomas Kämpke, Markus Kieninger, Michael Mecklenburg:
Efficient primer design algorithms. 214-225 - Siu-wai Leung, Chris Mellish, Dave Robertson:
Basic Gene Grammars and DNA-ChartParser for language processing of Escherichia coli promoter DNA sequences. 226-236 - Pierre-François Baisnée, Pierre Baldi, Søren Brunak, Anders Gorm Pedersen:
Flexibility of the genetic code with respect to DNA structure. 237-248 - Kevin A. T. Silverstein, Elizabeth Shoop, James E. Johnson, Ernest F. Retzel:
MetaFam: a unified classification of protein families. I. Overview and statistics. 249-261 - Elizabeth Shoop, Kevin A. T. Silverstein, James E. Johnson, Ernest F. Retzel:
MetaFam: a unified classification of protein families. II. Schema and query capabilities. 262-271 - Andreas Heger, Liisa Holm:
Picasso: generating a covering set of protein family profiles. 272-279
- T. Andrew Ronneberg, Stephen J. Freeland, Laura F. Landweber:
Genview and Gencode: a pair of programs to test theories of genetic code evolution. 280-281 - Weizhong Li, Lukasz Jaroszewski, Adam Godzik:
Clustering of highly homologous sequences to reduce the size of large protein databases. 282-283 - Kurt S. Thorn, Andrew A. Bogan:
ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions. 284-285 - Neema Jamshidi, Jeremy S. Edwards, Tom Fahland, George M. Church, Bernhard O. Palsson:
Dynamic simulation of the human red blood cell metabolic network. 286-287 - Pedro Mendes, Douglas B. Kell:
MEG (Model Extender for Gepasi): a program for the modelling of complex, heterogeneous, cellular systems. 288-289
Volume 17, Number 4, April 2001
- David J. States:
Time to defend what we have won. 299
- Christian J. Stoeckert Jr., Angel D. Pizarro, Elisabetta Manduchi, M. Gibson, Brian P. Brunk, Jonathan Crabtree, Jonathan Schug, Shai Shen-Orr, G. Christian Overton:
A relational schema for both array-based and SAGE gene expression experiments. 300-308 - Ka Yee Yeung, David R. Haynor, Walter L. Ruzzo:
Validating clustering for gene expression data. 309-318 - Daniel R. Masys, John B. Welsh, J. Lynn Fink, Michael Gribskov, Igor Klacansky, Jacques Corbeil:
Use of keyword hierarchies to interpret gene expression patterns. 319-326 - Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner:
A new approach to sequence comparison: normalized sequence alignment. 327-337 - Rainer Spang, Martin Vingron:
Limits of homology detection by pairwise sequence comparison. 338-342 - Christian E. V. Storm, Erik L. L. Sonnhammer:
NIFAS: visual analysis of domain evolution in proteins. 343-348 - Chris H. Q. Ding, Inna Dubchak:
Multi-class protein fold recognition using support vector machines and neural networks. 349-358 - Edward M. Marcotte, Ioannis Xenarios, David S. Eisenberg:
Mining literature for protein-protein interactions. 359-363 - Hubert Hug, Rainer Schuler:
Strategies for the development of a peptide computer. 364-368
- B. Dysvik, Inge Jonassen:
J-Express: exploring gene expression data using Java. 369-370 - J. L. Lessem, Stacey S. Cherny:
DeFries-Fulker multiple regression analysis of sibship QTL data: a SAS®macro. 371-372 - Cédric Notredame:
Mocca: semi-automatic method for domain hunting. 373-374 - S. Sujatha, S. Balaji, Narayanaswamy Srinivasan:
PALI: a database of alignments and phylogeny of homologous protein structures. 375-376 - Christoph Gille, Cornelius Frömmel:
STRAP: editor for STRuctural Alignments of Proteins. 377-378 - Kim Lan Sim, Tomoyuki Uchida, Satoru Miyano:
ProDDO: a database of disordered proteins from the Protein Data Bank (PDB). 379-380 - Eran Eyal, Rafael Najmanovich, Vladimir Sobolev, Marvin Edelman:
MutaProt: a web interface for structural analysis of point mutations. 381-382 - Christian M. Zmasek, Sean R. Eddy:
ATV: display and manipulation of annotated phylogenetic. 383-384 - Fiona S. L. Brinkman, Ivan Wan, Robert E. W. Hancock, Ann M. Rose, Steven J. M. Jones:
PhyloBLAST: facilitating phylogenetic analysis of BLAST results. 385-387
Volume 17, Number 5, May 2001
- Martin Vingron:
Bioinformatics needs to adopt statistical thinking - Editorial. 389-390
- Webb Miller:
Comparison of genomic DNA sequences: solved and unsolved problems. 391-397
- Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Marcin Jaroszewski, Wojciech T. Markiewicz:
Construction of DNA restriction maps based on a simplified experiment. 398-404 - Alexander V. Lukashin, Rainer Fuchs:
Analysis of temporal gene expression profiles: clustering by simulated annealing and determining the optimal number of clusters. 405-414 - Brian Gaschen, Carla Kuiken, Bette T. Korber, Brian T. Foley:
Retrieval and on-the-fly alignment of sequence fragments from the HIV database. 415-418 - Jeremy Buhler:
Efficient large-scale sequence comparison by locality-sensitive hashing. 419-428 - Jonas S. Almeida, João A. Carriço, António Maretzek, Peter A. Noble, Madilyn Fletcher:
Analysis of genomic sequences by Chaos Game Representation. 429-437 - Tony Y. T. Chan:
Unsupervised classification of noisy chromosomes. 438-444 - Ross D. King, Andreas Karwath, Amanda Clare, Luc Dehaspe:
The utility of different representations of protein sequence for predicting functional class. 445-454 - Joel R. Bock, David A. Gough:
Predicting protein-protein interactions from primary structure. 455-460 - Moritz Y. Becker, Isabel Rojas:
A graph layout algorithm for drawing metabolic pathways. 461-467 - Yury V. Bukhman, Jeffrey Skolnick:
BioMolQuest: integrated database-based retrieval of protein structural and functional information. 468-478
- Gráinne McGuire, Michael C. Denham, David J. Balding:
MAC5: Bayesian inference of phylogenetic trees from DNA sequences incorporating gaps. 479-480 - Louxin Zhang, Chew-Kiat Heng, Tin Wee Tan:
Cladogramer: incorporating haplotype frequency into cladogram analysis. 481-482 - Kazuhisa Ichikawa:
A-Cell: graphical user interface for the construction of biochemical reaction models. 483-484
Volume 17, Number 6, June 2001
- Win Hide:
ExScript: An 'EX'-Centric Approach to the Description of Transcript Diversity. 485-486
- Eric Harley, Anthony J. Bonner, Nathan Goodman:
Uniform integration of genome mapping data using intersection graphs. 487-494 - John Aach, George M. Church:
Aligning gene expression time series with time warping algorithms. 495-508 - Pierre Baldi, Anthony D. Long:
A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes. 509-519 - Olga G. Troyanskaya, Michael N. Cantor, Gavin Sherlock, Patrick O. Brown, Trevor Hastie, Robert Tibshirani, David Botstein, Russ B. Altman:
Missing value estimation methods for DNA microarrays. 520-525 - Peter D. Karp, Suzanne M. Paley, Jingchun Zhu:
Database verification studies of SWISS-PROT and GenBank. 526-532 - Rolf Apweiler, Paul J. Kersey, Vivien Junker, Amos Bairoch:
Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al. 533-534 - Ingrid B. Jakobsen, Jennifer A. Saleeba, Michael Poidinger, Timothy G. Littlejohn:
TreeGeneBrowser: phylogenetic data mining of gene sequences from public databases. 535-540 - Charlotte M. Deane, Quentin Kaas, Tom L. Blundell:
SCORE: predicting the core of protein models. 541-550 - Robert Garian:
Prediction of quaternary structure from primary structure. 551-556
- Dong Qi, A. Jamie Cuticchia:
Compositional symmetries in complete genomes. 557-559 - John M. Ward:
Identification of novel families of membrane proteins from the model plant Arabidopsis thaliana. 560-563
- Pierre R. Bushel, Hisham Hamadeh, Lee Bennett, Stella Sieber, Karla Martin, Emile F. Nuwaysir, Kate Johnson, Kelli Reynolds, Richard S. Paules, Cynthia A. Afshari:
MAPS: a microarray project system for gene expression experiment information and data validation. 564-565 - Michael E. Wall, Patricia A. Dyck, Thomas S. Brettin:
SVDMAN-singular value decomposition analysis of microarray data. 566-568 - Xuhua Xia, Zheng Xie:
AMADA: analysis of microarray data. 569-570 - Birgitta Geier, Gabi Kastenmüller, Matthias Fellenberg, Hans-Werner Mewes, Burkhard Morgenstern:
The HIB database of annotated UniGene clusters. 571-572 - Ari Löytynoja, Michel C. Milinkovitch:
SOAP, cleaning multiple alignments from unstable blocks. 573-574 - Nicolas Le Novère, Thomas Simon Shimizu:
STOCHSIM: modelling of stochastic biomolecular processes. 575-576 - Malay Kumar Basu:
SeWeR: a customizable and integrated dynamic HTML interface to bioinformatics services. 577-578
Volume 17, Supplement, June 2001
- Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark. 2001 [contents]
Volume 17, Number 7, July 2001
- David B. Searls:
Reading the book of life. 579-580
- Xiayi Ke, William Tapper, Andrew Collins:
LDB2000: sequence-based integrated maps of the human genome. 581-586 - Barbara A. Eckman, Anthony Kosky, Leonardo A. Laroco Jr.:
Extending traditional query-based integration approaches for functional characterization of post-genomic data. 587-601 - Jack E. Tabaska, Ramana V. Davuluri, Michael Q. Zhang:
Identifying the 3'-terminal exon in human DNA. 602-607 - Debraj Guha Thakurta, Gary D. Stormo:
Identifying target sites for cooperatively binding factors. 608-621 - Rongxiang Liu, Thomas W. Blackwell, David J. States:
Conformational model for binding site recognition by the E.coli MetJ transcription factor. 622-633 - Matthias Steinfath, Wasco Wruck, Henrik Seidel, Hans Lehrach, Uwe Radelof, John O'Brien:
Automated image analysis for array hybridization experiments. 634-641 - Jan Gorodkin, Christian Zwieb, Bjarne Knudsen:
Semi-automated update and cleanup of structural RNA alignment databases. 642-645 - Steffen Möller, Michael D. R. Croning, Rolf Apweiler:
Evaluation of methods for the prediction of membrane spanning regions. 646-653
- Jochen Hampe, Andreas Wollstein, Timothy Lu, Hans-Jürgen Frevel, Marcus Will, Carl Manaster, Stefan Schreiber:
An integrated system for high throughput TaqManTM based SNP genotyping. 654-655 - Raf M. Podowski, Erik L. L. Sonnhammer:
MEDUSA: large scale automatic selection and visual assessment of PCR primer pairs. 656-657 - Rob M. Ewing, J. Michael Cherry:
Visualization of expression clusters using Sammon's non-linear mapping. 658-659 - Yoshiyuki Suzuki, Takashi Gojobori, Masatoshi Nei:
ADAPTSITE: detecting natural selection at single amino acid sites. 660-661 - Alexei J. Drummond, Korbinian Strimmer:
PAL: an object-oriented programming library for molecular evolution and phylogenetics. 662-663 - Vladimir Makarenkov:
T-REX: reconstructing and visualizing phylogenetic trees and reticulation networks. 664-668 - Ralf Mrowka:
A Java applet for visualizing protein-protein interaction. 669-671
Volume 17, Number 8, August 2001
- Meena K. Sakharkar, Tin Wee Tan, Sandro J. de Souza:
Generation of a database containing discordant intron positions in eukaryotic genes (MIDB). 671-675 - Avril Coghlan, Dónall A. Mac Dónaill, Nigel H. Buttimore:
Representation of amino acids as five-bit or three-bit patterns for filtering protein databases. 676-685 - Zsuzsanna Dosztányi, Andrew E. Torda:
Amino acid similarity matrices based on force fields. 686-699 - Jimin Pei, Nick V. Grishin:
AL2CO: calculation of positional conservation in a protein sequence alignment. 700-712 - Kevin Karplus, Birong Hu:
Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set. 713-720 - Sujun Hua, Zhirong Sun:
Support vector machine approach for protein subcellular localization prediction. 721-728 - William R. Pitt, Mark A. Williams, M. Steven, B. Sweeney, Alan J. Bleasby, David S. Moss:
The Bioinformatics Template Library-generic components for biocomputing. 729-737
- David G. Cox, Federico Canzian:
Genotype transposer: automated genotype manipulation for linkage disequilibrium analysis. 738-739 - Yang He, Xiangming Xu, Kenneth R. Tobutt, Martin S. Ridout:
Polylink: to support two-point linkage analysis in autotetraploids. 740-741 - Gonçalo R. Abecasis, Stacey S. Cherny, W. O. C. Cookson, Lon R. Cardon:
GRR: graphical representation of relationship errors. 742-743 - Liqun Xing, Volker Brendel:
Multi-query sequence BLAST output examination with MuSeqBox. 744-745 - Marc A. Martí-Renom, Valentin A. Ilyin, Andrej Sali:
DBAli: a database of protein structure alignments. 746-747 - Paul I. W. de Bakker, Alex Bateman, David F. Burke, Ricardo Núñez Miguel, Kenji Mizuguchi, Jiye Shi, Hiroki Shirai, Tom L. Blundell:
HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families. 748-749 - Janusz M. Bujnicki, Arne Elofsson, Daniel Fischer, Leszek Rychlewski:
Structure prediction meta server. 750-751 - Dominique Douguet, Gilles Labesse:
Easier threading through web-based comparisons and cross-validations. 752-753 - John P. Huelsenbeck, Fredrik Ronquist:
MRBAYES: Bayesian inference of phylogenetic trees. 754-755 - Chenna Ramu:
SIR: a simple indexing and retrieval system for biological flat file databases. 756-758
Volume 17, Number 9, September 2001
- William R. Pearson:
Training for bioinformatics and computational biology. 761-762
- Ka Yee Yeung, Walter L. Ruzzo:
Principal component analysis for clustering gene expression data. 763-774 - Jeanne Kowalski:
A non-parametric approach to translating gene region heterogeneity associated with phenotype into location heterogeneity. 775-790 - Katsuhisa Horimoto, Satoshi Fukuchi, Kentaro Mori:
Comprehensive comparison between locations of orthologous genes on archaeal and bacterial genomes. 791-802 - Ian Holmes, William J. Bruno:
Evolutionary HMMs: a Bayesian approach to multiple alignment. 803-820 - Christian M. Zmasek, Sean R. Eddy:
A simple algorithm to infer gene duplication and speciation events on a gene tree. 821-828 - Ken-ichiro Fukuda, Toshihisa Takagi:
Knowledge representation of signal transduction pathways. 829-837
- Xiayi Ke, Andrew Collins, Shu Ye:
PIRA PCR designer for restriction analysis of single nucleotide polymorphisms. 838-839 - Jacques Colinge, Georg Feger:
Detecting the impact of sequencing errors on SAGE data. 840-842 - Izabela Makalowska, Joseph F. Ryan, Andreas D. Baxevanis:
GeneMachine: gene prediction and sequence annotation. 843-844 - Leo Goodstadt, Chris P. Ponting:
CHROMA: consensus-based colouring of multiple alignments for publication. 845-846 - Evgeni M. Zdobnov, Rolf Apweiler:
InterProScan - an integration platform for the signature-recognition methods in InterPro. 847-848 - Gábor E. Tusnády, István Simon:
The HMMTOP transmembrane topology prediction server. 849-850 - John J. Salama, Howard J. Feldman, Christopher W. V. Hogue:
VISTRAJ: exploring protein conformational space. 851-852 - Anton J. Enright, Christos A. Ouzounis:
BioLayout-an automatic graph layout algorithm for similarity visualization. 853-854 - Pentti Riikonen, Jorma Boberg, Tapio Salakoski, Mauno Vihinen:
BioWAP, mobile Internet service for bioinformatics. 855-856 - Kimberly F. Johnson, Simon M. Lin:
Critical Assessment of Microarray Data Analysis: the 2001 challenge. 857-858
Volume 17, Number 10, October 2001
- Mark Borodovsky, Eugene V. Koonin, Chris Burge, James W. Fickett, John Logsdon, Andrej Sali, Gary D. Stormo, Igor B. Zhulin:
The Third Georgia Tech-Emory International Conference on Bioinformatics: In Silico Biology; Bioinformatics After Human Genome (November 15-18, 2001, Atlanta, Georgia, USA). 859-861
- Vinhthuy T. Phan, Steven Skiena:
Dealing with errors in interactive sequencing by hybridization. 862-870 - Samuel Levy, Sridhar Hannenhalli, Christopher T. Workman:
Enrichment of regulatory signals in conserved non-coding genomic sequence. 871-877 - Martin C. Frith, Ulla Hansen, Zhiping Weng:
Detection of cis -element clusters in higher eukaryotic DNA. 878-889 - Igor B. Rogozin, Alexey V. Kochetov, Fyodor A. Kondrashov, Eugene V. Koonin, Luciano Milanesi:
Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a 'weak' context of the start codon. 890-900 - Eileen T. Kraemer, Jian Wang, Jinhua Guo, Samuel Hopkins, Jonathan P. Arnold:
An analysis of gene-finding programs for Neurospora crassa. 901-912 - Artemis G. Hatzigeorgiou, Petko Fiziev, Martin Reczko:
DIANA-EST: a statistical analysis. 913-919 - Ernst Kretschmann, Wolfgang Fleischmann, Rolf Apweiler:
Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT. 920-926 - Gill Bejerano, Yevgeny Seldin, Hanah Margalit, Naftali Tishby:
Markovian domain fingerprinting: statistical segmentation of protein sequences. 927-934 - Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader:
Clustering protein sequences-structure prediction by transitive homology. 935-941 - R. R. Mallios:
Predicting class II MHC/peptide multi-level binding with an iterative stepwise discriminant analysis meta-algorithm. 942-948 - Jerry Tsai, Neil Voss, Mark Gerstein:
Determining the minimum number of types necessary to represent the sizes of protein atoms. 949-956 - Piero Fariselli, Rita Casadio:
Prediction of disulfide connectivity in proteins. 957-964 - I King Jordan, G. Reid Bishop, Daniel S. Gonzalez:
Sequence and structural aspects of functional diversification in class I-mannosidase evolution. 965-976 - Ka Yee Yeung, Chris Fraley, Alejandro Murua, Adrian E. Raftery, Walter L. Ruzzo:
Model-based clustering and data transformations for gene expression data. 977-987 - Andrey Rzhetsky, Shawn M. Gomez:
Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome. 988-996
Volume 17, Number 11, November 2001
- Nikolay A. Kolchanov, Charlie Hodgman:
The 2nd international conference on the Bioinformatics of Genome Regulation and Structure (BGRS-2000), Novosibirsk, August 2000. 997
- Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, Nikolay L. Podkolodny:
Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis. 998-1010 - Pavel S. Novichkov, Mikhail S. Gelfand, Andrey A. Mironov:
Gene recognition in eukaryotic DNA by comparison of genomic sequences. 1011-1018 - Szymon M. Kielbasa, Jan O. Korbel, Dieter Beule, Johannes Schuchhardt, Hanspeter Herzel:
Combining frequency and positional information to predict transcription factor binding sites. 1019-1026 - Ponraj Prabakaran, Jianghong An, M. Michael Gromiha, Samuel Selvaraj, Hatsuho Uedaira, Hidetoshi Kono, Akinori Sarai:
Thermodynamic database for protein-nucleic acid interactions (ProNIT). 1027-1034 - Dmitry A. Afonnikov, Dmitry Yu. Oshchepkov, Nikolay A. Kolchanov:
Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions. 1035-1046 - Eugenia Migliavacca, Alexei A. Adzhubei, Manuel C. Peitsch:
MDB: a database system utilizing automatic construction of modules and STAR-derived universal language. 1047-1052 - Frank Schacherer, Claudia Choi, Ulrike Götze, Mathias Krull, Susanne Pistor, Edgar Wingender:
The TRANSPATH signal transduction database: a knowledge base on signal transduction networks. 1053-1057 - Rosel Kretschmer-Kazemi Far, Wolfgang Nedbal, Georg Sczakiel:
Concepts to automate the theoretical design of effective antisense oligonucleotides. 1058-1061
- Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, Nikolay L. Podkolodny:
Nucleosome formation potential of exons, introns, and Alu repeats. 1062-1064
- Vasily Ramensky, Vsevolod J. Makeev, Mikhail A. Roytberg, Vladimir G. Tumanyan:
Segmentation of long genomic sequences into domains with homogeneous composition with BASIO software. 1065-1066
- Fugen Li, Gary D. Stormo:
Selection of optimal DNA oligos for gene expression arrays. 1067-1076 - Man-Suen Chan, Martin C. J. Maiden, Brian G. Spratt:
Database-driven Multi Locus Sequence Typing (MLST) of bacterial pathogens. 1077-1083 - P. S. Umesh Adiga, A. Bhomra, Maria Grazia Turri, A. Nicod, S. R. Datta, Peter Jeavons, Richard Mott, Jonathan Flint:
Automatic analysis of agarose gel images. 1084-1089
Volume 17, Number 12, December 2001
- Masaru Tomita:
Towards Computer Aided Design (CAD) of Useful Microorganisms. 1091-1092
- Hui-Hsien Chou, Michael H. Holmes:
DNA sequence quality trimming and vector removal. 1093-1104 - William C. Ray, Robert S. Munson Jr., Charles J. Daniels:
Tricross : using dot-plots in sequence-id space to detect uncataloged intergenic features. 1105-1112 - Gert Thijs, Magali Lescot, Kathleen Marchal, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau:
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. 1113-1122 - Baris E. Suzek, Maria D. Ermolaeva, Mark J. Schreiber, Steven Salzberg:
A probabilistic method for identifying start codons in bacterial genomes. 1123-1130 - Leping Li, Clarice R. Weinberg, Thomas A. Darden, Lee G. Pedersen:
Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/KNN method. 1131-1142 - Katsuhisa Horimoto, Hiroyuki Toh:
Statistical estimation of cluster boundaries in gene expression profile data. 1143-1151 - Stefania Bortoluzzi, Fabio d'Alessi, Chiara Romualdi, Gian Antonio Danieli:
Differential expression of genes coding for ribosomal proteins in different human tissues. 1152-1157 - Caleb Webber, Geoffrey J. Barton:
Estimation of P-values for global alignments of protein sequences. 1158-1167 - Georg Fuellen, Johann-Wolfgang Wägele, Robert Giegerich:
Minimum conflict: a divide-and-conquer approach to phylogeny estimation. 1168-1178 - Michael Wildpaner, Georg Schneider, Alexander Schleiffer, Frank Eisenhaber:
Taxonomy workbench. 1179-1182 - Andreas Wagner:
How to reconstruct a large genetic network from n gene perturbations in fewer than n2 easy steps. 1183-1197 - Frank Kose, Wolfram Weckwerth, Thomas Linke, Oliver Fiehn:
Visualizing plant metabolomic correlation networks using clique-metabolite matrices. 1198-1208 - Mark Hoebeke, Hélène Chiapello, Philippe Noirot, Philippe Bessières:
SPiD: a subtilis protein interaction database. 1209-1212 - Michael V. Boland, Robert F. Murphy:
A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells. 1213-1223
- Hiromi Nishida:
Evolution of amino acid biosynthesis and enzymes with broad substrate specificity. 1224-1225
- Nicolas Le Novère:
MELTING, computing the melting temperature of nucleic acid duplex. 1226-1227 - Michael Baudis, Michael L. Cleary:
Progenetix.net: an online repository for molecular cytogenetic aberration data. 1228-1229 - Keith A. Jolley, E. J. Feil, Man-Suen Chan, Martin C. J. Maiden:
Sequence type analysis and recombinational tests (START). 1230-1231 - Theresa Zhang, Michael Q. Zhang:
Promoter Extraction from GenBank (PEG): automatic extraction of eukaryotic promoter sequences in large sets of genes. 1232-1233 - Thomas Junier, Marco Pagni, Philipp Bucher:
mmsearch: a motif arrangement language and search program. 1234-1235 - Harpreet Singh, G. P. S. Raghava:
ProPred: prediction of HLA-DR binding sites. 1236-1237 - Roberto C. Togawa, John F. Antoniw, Jonathan G. L. Mullins:
TMCompare: transmembrane region sequence and structure. 1238-1239 - Leszek Rychlewski:
ToolShop: prerelease inspections for protein structure prediction servers. 1240-1241 - Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost:
EVA: continuous automatic evaluation of protein structure prediction servers. 1242-1243 - Sudhir Kumar, Koichiro Tamura, Ingrid B. Jakobsen, Masatoshi Nei:
MEGA2: molecular evolutionary genetics analysis software. 1244-1245 - Hidetoshi Shimodaira, Masami Hasegawa:
CONSEL: for assessing the confidence of phylogenetic tree selection. 1246-1247
a service of 
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
last updated on 2024-04-17 21:29 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
