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ORCID2nd ICCABS 2012: Las Vegas, NV, USA
- Sorin Istrail, Ion I. Mandoiu, Mihai Pop, Sanguthevar Rajasekaran, John L. Spouge:
IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012, Las Vegas, NV, USA, February 23-25, 2012. IEEE Computer Society 2012, ISBN 978-1-4673-1320-9
Keynote Talk Abstracts
- Pavel A. Pevzner:
Keynote: De novo sequencing of novel peptide antibiotics by tandem mass spectrometry. 1 - David Sankoff:
Keynote: Aspects of fractionation. 1
Invited Talk Abstracts
- Srinivas Aluru:
Invited: Reverse engineering whole-genome networks. 1 - Tanya Y. Berger-Wolf
:
Invited: Computational behavioral ecology. 1 - Vladimir Filkov:
Invited: Identifying mutations from TILLING experiments. 1 - Bjarni V. Halldórsson:
Invited: Algorithmic challenges in DNA sequencing and disease association. 1 - Maricel G. Kann:
Invited: A protein domain-centric approach to translational bioinformatics. 1 - Rachel J. O'Neill, Mark Longo, Chu Zhang, Sarah Trusiak, Laura Hall, Judy Brown, Craig Obergfell:
Invited: Using novel small RNAs to understand genome structure and function. 1 - Roded Sharan:
Invited: From protein networks to disease mechanisms. 1 - Gowtham Atluri, Sanjoy Dey, Gang Fang, Sean Landman, Vanja Paunic, Wen Wang, Michael S. Steinbach, Vipin Kumar:
Invited: Discovering combinatorial biomarkers. 1-2
Extended Abstracts
- Margareta Ackerman, Daniel G. Brown, David Loker:
Effects of rooting via outgroups on ingroup topology in phylogeny. 1-7 - Shibdas Bandyopadhyay, Sartaj Sahni, Sanguthevar Rajasekaran:
PMS6: A fast algorithm for motif discovery. 1-6 - Fabrizio F. Borelli, Raphael Y. de Camargo, David Correa Martins Jr., Beatriz Stransky, Luiz C. S. Rozante:
Accelerating gene regulatory networks inference through GPU/CUDA programming. 1-6 - Peikai Chen, Y. S. Hung, Tsz-Kwong Man, Ching C. Lau, Yubo Fan, Stephen T. C. Wong:
A gene signature based method for identifying subtypes and subtype-specific drivers in cancer with an application to medulloblastoma. 1-6 - Yam Ki Cheung, Ovidiu Daescu, J. Steven Kirtzic, Lech Papiez:
Volume matching with application in medical treatment planning. 1-6 - Pamela Clark, Jessica Grant, Samantha Monastra, Filip Jagodzinski, Ileana Streinu:
Periodic rigidity of protein crystal structures. 1-6 - Naomi Fox, Ileana Streinu:
Towards accurate modeling for protein rigidity analysis. 1-6 - Juan Carlos Francisco, Frederick Cohan, Danny Krizanc:
Demarcation of bacterial ecotypes from DNA sequence data: A comparative analysis of four algorithms. 1-6 - Jason Gallia, Katelyn Lavrich, Rachel McGough, Anna Tan-Wilson, Patrick H. Madden:
Filtering of MS/MS data for peptide identification. 1-6 - Arup K. Ghosh, Faraz Hussain, Sumit Kumar Jha, Christopher James Langmead, Susmit Jha:
Decision procedure based discovery of rare behaviors in Stochastic Differential Equation models of biological systems. 1-6 - Eren Gultepe, Hien Nguyen, Timothy E. Albertson, Ilias Tagkopoulos:
A Bayesian network for early diagnosis of sepsis patients: a basis for a clinical decision support system. 1-5 - Mai Hamdalla, David F. Grant, Ion I. Mandoiu, Dennis W. Hill, Sanguthevar Rajasekaran, Reda A. Ammar:
The use of graph matching algorithms to identify biochemical substructures in synthetic chemical compounds: Application to metabolomics. 1-6 - Ricardo Henao, J. Will Thompson, M. Arthur Moseley, Geoffrey S. Ginsburg, Lawrence Carin, Joseph E. Lucas:
Hierarchical factor modeling of proteomics data. 1-6 - Linh Hunyh, Ilias Tagkopoulos:
A robust, library-based, optimization-driven method for automatic gene circuit design. 1-6 - Faraz Hussain, Raj Gautam Dutta, Sumit Kumar Jha, Christopher James Langmead, Susmit Jha:
Parameter discovery for stochastic biological models against temporal behavioral specifications using an SPRT based Metric for simulated annealing. 1-6 - Junjie Li, Sanjay Ranka, Sartaj Sahni:
Pairwise sequence alignment for very long sequences on GPUs. 1-6 - Yuan Li, Shaojie Zhang:
Finding consensus stable local optimal structures for aligned RNA sequences. 1-6 - Yuri Pirola, Gianluca Della Vedova, Stefano Biffani, Alessandra Stella, Paola Bonizzoni:
A fast and practical approach to genotype phasing and imputation on a pedigree with erroneous and incomplete information. 1-6 - Ming-Chih Shih, Shou-Hsuan Stephen Huang, Youli Zu, Rachel Donohue, Chung-Che Jeff Chang:
Automatic B cell lymphoma detection using flow cytometry data. 1-6 - John L. Spouge, Leonardo Mariño-Ramírez, Sergey Sheetlin:
The ruzzo-tompa algorithm can find the maximal paths in weighted, directed graphs on a one-dimensional lattice. 1-6 - Martin Strauch, Julia Rein, C. Giovanni Galizia:
Signal extraction from movies of honeybee brain activity by convex analysis. 1-6 - Andrew Thrasher, Douglas Thain, Scott J. Emrich, Zachary Musgrave:
Shifting the bioinformatics computing paradigm: A case study in parallelizing genome annotation using MAKER and Work Queue. 1-6 - Wei Zhang, Erliang Zeng, Dan Liu, Stuart E. Jones, Scott J. Emrich:
A machine learning framework for trait based genomics. 1-6 - Chunfang Zheng, Victor A. Albert, Eric Lyons, David Sankoff:
Ancient angiosperm hexaploidy meets ancestral eudicot gene order. 1-6 - Cuncong Zhong, Justen Andrews, Shaojie Zhang:
Discovering non-coding RNA elements in drosophila 3′ untranslated regions. 1-6
Poster Abstracts
- Khaled Dawoud, Ala Qabaja, Shang Gao, Reda Alhajj, Jon G. Rokne:
Identifying cancer biomarkers by knowledge discovery from medical literature. 1 - Hyekyeong Kwon, Jang-Soo Chun, Zee-Yong Park, Dong-Yu Kim:
Poster title (mass spectrometric protein profiling analyses of pathological and physiological hypertrophy cardiac muscle tissues). 1 - James Lindsay, Ion I. Mandoiu, Hamed Salooti, Alexander Zelikovsky:
Poster: Accurate scaffolding of large genomes using integer programming and Non-Serial Dynamic Programming. 1 - Jerlin C. Merlin, Hieu Dinh:
Poster: Randomized algorithms for planted Motif Search. 1 - James T. Morton, Patricia Abrudan, Chun Liang, John E. Karro:
Poster: Sequence classification of homopolymer emissions (SCOPE). 1 - Fabiola M. R. Pinheiro, Mu-Hsing Kuo:
Poster: Applying data mining algorithms to early detection of liver cancer. 1 - Maryam Rahimi, Mohamadali Oghabiyan:
Poster evaluation of the level set method by using similarity criterion (KCC) for clustering and analysis of functional MRI data. 1 - Ernur Saka, Eric C. Rouchka:
Poster: Image registration and visualization tool for in-situ gene expression images. 1 - Marissa N. Smith, Jesse A. Port, James C. Wallace, Elaine M. Faustman:
Poster: Public health applications of metagenomic data using publicly available computing framework. 1 - Tomoya Tagami, Tsuyoshi Hachiya, Yasubumi Sakakibara:
Poster: In silico microarray algorithm: Accurate and fast taxonomic profiling from short read sequences. 1 - Paul Yenerall, Yuanyuan Jiang, Leming Zhou:
Poster: MIGL - a database for identifying the mechanisms of intron gain and loss. 1 - Yuan Zhang, Dhananjai Madhava Rao, Mufit Ozden, Jens Mueller, Praveen Raj Kumar, Chun Liang, John E. Karro:
Poster: De novo expression fragment assembly from Spanning Trees (EAST). 1 - Lingfei Zhi, Zhao Wang, Aman Behal:
Poster: Parameter estimation for a reduced order spiking neuron model with relevance to in vitro embryonic rat motoneuronal data. 1 - Italo Zoppis, Massimiliano Borsani, Erica Gianazza, Clizia Chinello, Giancarlo Albo, Francesco Rocco, André M. Deelder, Yuri E. M. van der Burgt, Marco Antoniotti, Fulvio Magni, Giancarlo Mauri:
Poster: Characterization of distinguishing regions for Renal Cell Carcinoma discrimination. 1
CANGS Workshop Abstracts
- Derek Aguiar, Sorin Istrail:
Workshop: Robust algorithms for inferring haplotype phase and deletion polymorphism from high-throughput whole genome sequence data. 1 - Sahar Al Seesi, Ion I. Mandoiu:
Workshop: Inference of allele specific expression levels from RNA-Seq data. 1 - Srinivas Aluru:
Workshop: Taxonomic clustering of large-scale metagnomic data. 1 - Hieu Dinh, Sanguthevar Rajasekaran:
Workshop: An efficient data structure for exact-match overlap graphs and next generation sequence assembly. 1 - Scott J. Emrich:
Workshop: Opportunities and challenges of non-model ecoinformatics. 1 - Wei Li, Tao Jiang:
Workshop: Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads. 1 - Bo Liu, Mihai Pop:
Workshop: Comparative assembly of metagenomic sequences. 1 - Nicholas Mancuso, Bassam Tork, Pavel Skums, Lilia Ganova-Raeva, Ion I. Mandoiu, Alexander Zelikovsky:
Workshop: A maximum likelihood method for quasispecies spectrum assembly. 1 - Serghei Mangul, Adrian Caciula, Ion I. Mandoiu, Alexander Zelikovsky:
Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution. 1 - Rachel J. O'Neill, Ion I. Mandoiu, Mazhar I. Khan, Craig Obergfell, Hongjun Wang, Andrew Bligh, Bassam Tork, Nicholas Mancuso, Alexander Zelikovsky:
Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data. 1 - Jason Pell, Arend Hintze, Rosangela Canino-Koning, Adina Howe, James M. Tiedje, C. Titus Brown:
Workshop: Graph compression approaches in assembly. 1-2 - Onur Sakarya, Heinz Breu:
Workshop: Gene fusion detection with short and medium length next generation sequencing. 1 - Konrad Scheffler, N. Lance Hepler, Martin D. Smith, Wayne Delport, Art F. Y. Poon, Douglas D. Richman, Sergei L. Kosakovsky Pond:
Workshop: Error correction, noise filtering, and phylogenetic analysis of HIV sequences using the 454 platform. 1 - Fabio Vandin, Eli Upfal, Benjamin J. Raphael:
Workshop: Algorithms for discovery of mutated pathways in cancer. 1 - Jin Zhang, Yufeng Wu:
Workshop: Calling Structural Variation with low-coverage sequencing data by mapping to focal region. 1
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